K38517

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38517

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38517

Determination of introduced cDNA(s)

  • J023056F13 - Rice Full-length cDNAs - Original: J023056F13

    full reading [+] show sequence

    Nucleotide sequence: J023056F13 - full reading 
    GTCCATCCAC CCATAGCTAT CTCTAGCTAG CTTGCACATT CTTCATTCTT 
    CTTGCAATCA GAGCTAGAGA AAAAGAGTTT GAGAGAGATC TAAGAGATGT 
    CAGGGGTTTG GGTGTTCAAG AACGGGGTGG TGAGATTGGT GGAGAAGCAG 
    CAGGCGACGG CGGGGACGGC GGTGGCGGGA GGGAGGAGGA AGGCGCTGGT 
    GCACACGCCG TGCGGGCAGG TGGTGTCGTC GTACGCGGCG CTGGAGGCGC 
    GGCTGACGGC GCTCGGGTGG GAGCGCTACT ACGAGGACCC CTCCCTCTTC 
    CAGTTCCACA AGCGTGGCTC CCTCGACCTC ATCTCCCTCC CCGCCGACTT 
    CTCCGCCTTC TCCTCCGTCC ACATGTACGA CATCGTCGTC AAGAACCGCG 
    ACTCCTTCCG CGTCGTCGAC GCCTAAATTG ACCTATGTAT AGGCTCGCAT 
    GCATGCAAGG TAGACGACCA TCACCTTGCA TGCATGCAGG CTATCATTCT 
    CTCTTCGTCT CCGTCTTCGT CTTTCATCTT TGTTGTGGTG TGTGTGAATT 
    TATTATACTT CTTATGACTG TGTGTGTGAC TGTGTGAGAG TTCATGGAGA 
    GTGATGAGTA GTGGTATACA TATGTGTCGT CGCTGATCGA TTTGGTTTAT 
    TACCTTGTGG GTGGGTATTA ATTATCAGCA GTGTGATATA TCAATTGCTT 
    ACTTGTATGT GTATCATGTA CATGAGTGAG TGTGGCTGAT GCATATATAT 
    AGAGGTCTTT AATAATTATG TACTATATAT TTGTGC

    Gene models with high sequence identity

    1. AT5G10625.1 [+] show detail - BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has ...
      E-value: 3e-26; Score: 115.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G10625.1

    Model type
    Protein coding
    Computational Description
    BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR