K38524

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38524

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38524

Determination of introduced cDNA(s)

  • J013001D12 - Rice Full-length cDNAs - Original: J013001D12

    full reading [+] show sequence

    Nucleotide sequence: J013001D12 - full reading 
    GAGGAGCAGC AACGAGAAAA GGCGGAGGCG GCGGCGCAAC CGACAAGGAA 
    AAGCAAAGCG AGAGCAGGAA AACCTCGCCG GCGGCGACAC CACCACCACC 
    AGCAGGCAGG GATGGCCCGG TACGACCGCG CGATCACCGT CTTCTCCCCC 
    GACGGCCACC TCTTCCAGGT GGAGTACGCC CTCGAGGCCG TCCGCAAGGG 
    CAACGCCGCC GTCGGCGTCC GCGGCACCGA CACCGTCGTC CTCGGCGTCG 
    AGAAGAAATC CACCCCCAAG CTCCAGGACT CCAGGTCCAT GCGCAAGATC 
    GCCAGCCTCG ACACCCACAT CGCGCTTGCC TGCGCGGGGC TCAAGGCGGA 
    CGCCCGCGTG CTCATCAACC GGGCGCGCGT CGAGTGCCAG AGCCACCGCC 
    TCACCGTCGA GGACCCCGTC ACCGTCGAGT ACATCACGCG CTACATCGCC 
    GGACTGCAGC AGAAGTACAC CCAGAGCGGC GGGGTGCGCC CCTTCGGCCT 
    CTCCACCCTC ATCGTCGGCT TCGACCCCTA CACCGAGAAG CCCGCCCTCT 
    ACCAGACCGA CCCATCCGGC ACCTTCTCCG CCTGGAAGGC CAACGCCACC 
    GGCCGCAACT CCAACTCCAT GCGCGAGTTC CTCGAGAAGA ATTACAAGGA 
    CACCTCCGGC AAGGAGACCA TCAAGCTTGC CATCCGAGCC CTCCTTGAGG 
    TTGTCGAGAG CGGTGGCAAG AACATCGAGA TTGCGGTGAT GACACACAAG 
    GATGGCCTCC GCGAGCTGGA GGAGGCTGAG ATCGACGAGT ACGTGGCTGA 
    GATTGAAGCA GAGAAGGCTG CCGCCGAGGC CGCGAAGAAG GGCGCCCCGA 
    AAGAAACCTG ACCTGATCAT CATGATTCAG CAAAGCATAA TCTCTCTTAG 
    CATGTGTTGT TTCTTTTCTG TTCTTGTTTG AGAGGAACGC AGAACTGTTT 
    GGTTCAACTG AAGTGGATAT GGCTATTTGC TGATCAGCCT ACCTGGAGTA 
    AATCCTCATG CTATATGCTT TGCG

    Gene models with high sequence identity

    1. AT5G66140.1 [+] show detail - proteasome alpha subunit D2
      E-value: 8e-114; Score: 407.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 2.2e-79
    HMMPfam Proteasome, subunit alpha/beta 2.1e-58
    HMMPfam Proteasome, alpha-subunit, conserved site 8.4e-15
    FPrintScan PRICHEXTENSN 9.4e-11
    FPrintScan PRICHEXTENSN 9.4e-11
    FPrintScan PRICHEXTENSN 9.4e-11
    FPrintScan PRICHEXTENSN 9.4e-11
    FPrintScan PRICHEXTENSN 9.4e-11
    HMMPanther PROTEASOME SUBUNIT ALPHA TYPE 7 1.2e-157
    HMMPanther PROTEASOME SUBUNIT ALPHA/BETA 1.2e-157
    Coil coiled-coil 0
    PatternScan Proteasome, alpha-subunit, conserved site 0
    Gene3D no description 1.1e-79

    See the detailed result >

    AT5G66140.1

    Model type
    Protein coding
    Short Description
    proteasome alpha subunit D2
    Curator Summary
    Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
    Computational Description
    proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR