K38525

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38525

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38525

Determination of introduced cDNA(s)

  • J023024I15 - Rice Full-length cDNAs - Original: J023024I15

    full reading [+] show sequence

    Nucleotide sequence: J023024I15 - full reading 
    GGGCGGACGC GGAGGGCGGC GGCGGCAGCA GCAGCAAACC GCCGCTTTGG 
    CAGAAGAGGA ATCCGGGATG GCCGGCGGCG GCGGCGGCGG GAATCGCCTG 
    GACCTCCCCG TGGTGGACCT CGCGTCCTCC GACCCCCGAG CCGCCGCCGA 
    GTCCATCCGA AAGGCGTGCG TGGAGTCCGG ATTCTTCTAC GTGGTCAACC 
    ATGGGGTGGA GGAGGGATTG CTGAAGAGGT TGTTCGCGGA GAGCTCGAAG 
    TTCTTCGAGC TGCCGATGGA GGAGAAGATA GCGCTGCGGA GGAACAGCAA 
    CCACCGGGGA TACACCCCGC CCTACGCCGA GAAGCTCGAT CCCTCGTCCA 
    AATTCGAAGG AGACCTCAAG GAAAGTTTCT ATATTGGGCC TATTGGAGAT 
    GAAGGTTTGC AGAATGATGC TAACCAGTGG CCTTCTGAAG AGCGCTTACC 
    AAGTCGGAGG GAGACAATTA AGATGTACCA TGCAAGTGCA CTGTCTACTG 
    GCAAAAGGAT ACTCTCTCTA ATCGCTCTGA GTTTGAATCT TGACGCTGAA 
    TTCTTTGAGA ACATTGGTGC CTTCAGCTGC CCATCAGCAT TTCTTCGATT 
    ATTGCACTAC CCAGGTGAAG TAGACGACTC TGATGATGGC AATTATGGTG 
    CATCAGCTCA CTCTGATTAT GGAATGATAA CCCTCCTAGC AACAGACGGC 
    ACTCCTGGGC TACAGATATG CAGGGAAAAG AATAGGAATC CCCAGCTCTG 
    GGAAGATGTT CATCACATTG ATGGGGCCCT GATTGTTAAC ATTGGCGATT 
    TGCTAGAAAG GTGGACGAAT TGTATTTACA GGTCTACAGT GCACCGTGTT 
    GTTGCAGTTG GTAAAGAGCG ATATTCTGCG GCTTTTTTTC TTGACCCAAA 
    CCCTGATTTA GTGGTTCAGT GTTTGGAAAG CTGTTGCAGC GAGTCATGCC 
    CACCGAGGTT CTCACCTATA AAGAGTGGCG ACTATTTGAA AGAGCGATTG 
    AGCGCTACAT ACAAATAGTC CTATGCTTTT TCATGTGTAA AAGGAGGCTA 
    ACATGTGCTA CACGGCCGGC CATCGTTCTC CATTGTCCAT TTTTCTTCTG 
    CGTTTAGACA TCACAGTAGT CCAGAAGGTT GTTTGTGTTG TTTTACTGTA 
    ACGCTGTAAA GAAAAAGTCT GCAGTGATGT GCTATGCTTG ATTTCTCTCT 
    CCACTGCTCG ACACCAACCT GAACTTTTTA TTGTTTGTCG TTCAAAAAAA 
    AAACTTTTTA TTGTCACCTG CGAGCTGACT GGTGTTTGGA CTAGTATTCT 
    TGTTGACTTG GTAAAGAAAC TCCAGTTTGA TCCTGGGAGC C

    Gene models with high sequence identity

    1. AT4G16770.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
      E-value: 4e-83; Score: 305.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oxoglutarate/iron-dependent oxygenase 4.9e-19
    superfamily Clavaminate synthase-like 2.4e-86
    Gene3D no description 1.7e-82
    FPrintScan Isopenicillin N synthase 7.1e-18
    FPrintScan Isopenicillin N synthase 7.1e-18
    FPrintScan Isopenicillin N synthase 7.1e-18
    FPrintScan Isopenicillin N synthase 7.1e-18
    FPrintScan Isopenicillin N synthase 7.1e-18
    FPrintScan Isopenicillin N synthase 7.1e-18
    HMMPanther GIBBERELLIN OXIDASE-RELATED 3.6e-112
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 3.6e-112

    See the detailed result >

    AT4G16770.1

    Model type
    Protein coding
    Short Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Computational Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, flavonoid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G16765.1); Has 6583 Blast hits to 6566 proteins in 839 species: Archae - 0; Bacteria - 934; Metazoa - 52; Fungi - 818; Plants - 3817; Viruses - 0; Other Eukaryotes - 962 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR