K38532

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38532

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38532

Determination of introduced cDNA(s)

  • J023080G15 - Rice Full-length cDNAs - Original: J023080G15

    full reading [+] show sequence

    Nucleotide sequence: J023080G15 - full reading 
    GGTGCCTGTC GTCTTCTCGC CTCTTCGTCT CCTCGTCCGC CCAAATCCGA 
    GCTCCCTCCG CTGGCGGCGG CGCCGGCGAT TCCTCGCGCG CGCTCCTGTT 
    TCACGAGGGT GGCGCCGACG CCCGCCGCCT GTTCGGCGGA ATGTCTGCGC 
    GGAAGGAGGC CAAGGGATCG GCCGGCGGAG ACCGCATAGG GGCCCTCCCG 
    GACGAGGTGC TCCACCGCGT GCTCTCCTTC CTACCGGCGC AGGATGCTGT 
    CCGGACGTGC GTGCTAGCCC CGCGCTGGCG CCACCTCTGG AAGTCCGCCA 
    CGGGGCTGCG CGTTGGCGAG GACGAGAGCA ATCTGGGGAG TGTGAAGGAG 
    CAGCAGGAGT TCCTTGACCA TCTGCTGGTA CTCCGTGATA GCGCGCCTCT 
    TGAAACCTGC GTGCTAAGGT TCAATTGGTA TGACGACGAT GACTTCGAGG 
    ACATATTCCG GCTGAACGTC TGGTTCAGGT ATGCTATCCA CCGCAAGGTT 
    CGGTTCCTTC GACTCGATGT CTGGCAGGAA GAGGAATTTG GCAACCCGGT 
    TCCGATAGAT GAGCAGCCTA TTGTCTCTCA GCACTTGACA AGGCTACAGC 
    TTTATGGTAT AGTGCTAAAC GACGGCTTGC TTGACTTCTC AAGCTGCCCA 
    TCATTGGAGC ATCTAGTGTT TGAGTCATGC GTATTTGAGT GTGCCAAGAT 
    CTCATCTAAC TCCGTAAAAC ATCTGAGCAT CACGTTTTCC AATTTCCCCG 
    CTGGGACCTC ACGGGTTCGT ATTGATATCC CGAGTCTTGT TTCTCTGCGG 
    CTGGATCGCA TCTATGACCG TAAGCCAGTG CTTGAGAGGA TGCCATCATT 
    AGTTGATGCA TTTGTCAGTG TCCCAAGCTC TAGTGAAGAC TTCTGTGGTG 
    AATCTGACTC TGGGGATTGT GGTCGTGACG GCTGTGAATC TTGTTATGGT 
    TTCACGAACA AAAATTGTGT GCTTTTGGAA GGTTTGTCGG AAGCTAAGAT 
    GTTGGTGCTG ATAAACGAAG ATGAATCGTT TATTTTCAAA AGGGATTTGA 
    AATGGTGCCC AACATTTAGC AAGTTAAAGA CTTTGATACT CAATGGGTAC 
    TGGTGTGTGC CTGATGATTC TCACATGCTA GCTCGCATTC TTGAACACTC 
    GCCAGCCCTA GAAAAACTCG TTTTCCAGCT TGGTTACCAG GCATATAAAC 
    GTACAAATAA AATTAAAGGA ATTCTCAATC CAATGGAGAG ATCAGCTGGA 
    ATATCAGAAC ACCTCCAGAT AGTTGAAGTT CAATGCAATG CGATTGATGG 
    TCAGGTTCTT AAAGTTTTGA AGTACCTGTC AACATTTAAA ATATATTTCA 
    GTTTGGAGGA AGCGACGATT GAGAGTTAGA TGATCATGAT GATGACGAAA 
    AAGGCTTGAT GCACAAGTTC TTGACAATTA GAAGTTTGAG CTGGGAACTA 
    CGTTATCTTT CCTCTATGTG TTTCTTCAAA GAACTTTAGC TTTGCCTTGT 
    AATGGGCCGT TTACATTGTC TAGTGTCTAC CTAGAAATGG GTTTCTCATA 
    TGCGGATGGT TTGAAATTGA TTGTAAAAGG ACCTATTTCA CCAAGTAGTG 
    CTAATTTATC CCTTTT

    Gene models with high sequence identity

    1. AT3G59190.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 1e-14; Score: 78.60

     

    InterPro Scan Digest

    Program Description E-value
    superfamily F-box domain, Skp2-like 9.7e-11
    ProfileScan F-box domain, cyclin-like 9.444

    See the detailed result >

    AT3G59190.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G14103.2); Has 1982 Blast hits to 1934 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1982; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR