K38642

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38642

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38642

Determination of introduced cDNA(s)

  • J023104P21 - Rice Full-length cDNAs - Original: J023104P21

    full reading [+] show sequence

    Nucleotide sequence: J023104P21 - full reading 
    GACGCGCGCA TTCAGTTTTC ATTTCAGTTC GAAATAAACA CCGAAAGTTG 
    CCCAAATACT CTCCCAAGTT ATTTTGTTCT TGTTCTCTGC ATTCTCTGAA 
    TTCTCTGTCT CCCTGAAAGT TTCTTCAGTC TGCTGTGCCG GATAGCTACA 
    GGACGCCCAC AAGGTGTTCG ATTGGTGTTC TTCGCCAACA AGTGGTATCA 
    GAGCACTCAG GTTGAGGGCT GATCTGACAC CATGGCGTTG GTTCCGGCGG 
    GAGCCGCAGC GGATCCGGCG AGGGGGAGCT CAGGGAGTGC GTTCTCCTAC 
    CCACAACTCA CGGCGACGAA TTACACCAGC TGGTGCATTC GCGTTCAGGC 
    AATGATGGAG GACCAGGGCG TGTGGGACGC CATCGAGCCG GCGGCCGGGG 
    TGGCCGTCGA CCCAAGAAGG GACAAGAAGT CGAAGTCCCA TCTGCTGCAG 
    TCCCTCCCGG AGGACTTGCT GATGCAGGTG GCAAAGAAGA GATCGGCAAA 
    GGAAGTGTGG GATTGCTTGA AGACAAGGTT CGTGGGCGCG GACCGCGTTC 
    GCGAAGCGCG CCTGCAGACG TTGAAGGGTG AATTTGGTGC CATGGTGATG 
    GAGCCGGGGG AAACTCTGGA TCAGTACGCG GGCCGCATCA CCGCGATGAG 
    CGTGCGTCAC TCGGTGTTGG GCTCGACACT GAGTGATTCC GCGATAGTGA 
    AGAAGCTGTT CGACACGGTG CCAGAGAAAT TCATCAGCCT CGTCGCAGGT 
    ATTGAGCAGT TTTATGAGAT TGATAATATG CCATTTGAGG AGGCGGTGGG 
    TCGTCTCAAG GCCTACGAAG AACGAGTTCG CAAGAAGAAG GCGGCCGCTG 
    GTGGTGTCAC CGCCGACGGT CAAGTACTTC TCACTCAGGC GGAGTGGGAG 
    GCGCGTTTCA GGAAGGACGG CAGCGAGTCG TCTTCGCCGC AGAAAAACAA 
    ACCTCCCAGC GACAGGGGAA ACCGTGCCCA GGGCGGACGC GGTCGCGGCA 
    GAGGGCACGG TGGAGGTGGT GGACGCGGCA GCGCGCCGCG GAACAGTGGC 
    GCTGGTGGCT CTGGCGGCGG TGGCCGTGAC AAGAGCCACA TCAAGTGCTA 
    CAACTGCGAA GAATTCGGCC ACTACTCCAC CCAGTGCCCT CATCCCAAGA 
    AGAAGAAGGT GGAGGCCCAT CTCGCGCAAA CCGACGACGC AAACCCTGCA 
    TTGTTACTGG CGGTGACCGA AGACGAGCCG GCGAGCGGGC TGGTCGTACA 
    CGAGGAGCGT GTGTGGCCGC AGCTGCTGTT GGCTGACAGC GGAGCAGCCA 
    CCGGGGACAT CTGGTTCCTG GACAATGGGG CAAGCAACCA CATGACGGGT 
    GATCGTGCTA AGTTCAGAGA TCTAGACGTA TCAATCACCG GGAGCGTCAA 
    GTTCGGGGAC GCCTCAACTG TGAAAATTCA GGGGAAAGGG TCTATCCTGT 
    TCTCCTGCAA GAATGGGGAT CAATGGCTGC TGCAGGATGT TTTTTATATC 
    CCTAGTCTGT GTTGCAACAT GGTGAGCTTG GGCCAGCTCA CAGAAACGGG 
    GCACAGAGTG GTGATGGATG AAGATGTGCT CGAGGTGTTC GACAAAAGTC 
    CCCTGCGGCT GGTTATGCGG GTGAGGCGCA CCCCTAATCG GCTGTACCGG 
    ATCGAGCTGA AGCTAGCCAC TCCGGTGTGC CTGCTGACAA GGATGGATGA 
    GCCAGCATGG CTCTGGCATG CACGGCTTGG GCATGTCAAT TTCCAGGCGA 
    TGAAGCTGTT GGCTGACAAG GGCATGGCTG GTGGCATCCC GGCGATCACA 
    CATCCAAACC AGCTCTGTCA GGCATGTCTG GTTGCAAAGC AGATAAGGCA 
    GCCGTTTCCC GCAACGGCGA ACTTCAGGGC GGAGGAGCCG CTCGAGTTGC 
    TCCACATTGA TTTATGTGGA CCGATCACCC CGACAACTAT GGCCGGTAAT 
    CGTTACTTTA TGCTAATTGT TGATGATTTC TCACGGTGGA TGTGGATGTT 
    CGTGATCAAA ACGAAGGACC AGGCACTAGA GGCTTTCACC AAGTTCAAGC 
    CGCTGGCCGA GAACACGGCC GGGCGGCGCA TCAAGACGCT GAGATCGGAT 
    CGCGGTGGCG AATTCCTGTC GGGCGAATTC GCGCAGTTGT GCGAGCAGGC 
    GGGCATCCAG CGGCATCTGA CGGCGCCATA CTCACCCCAG CAAAACGGGG 
    TGGTGGAACG CCGAAATCGT TCGGTAATGG CGATGGCACG ATCTCTGATG 
    AAAGGGATGT CAGTGCCGGG CAGGTTTTGG GGGGAGGCGG TGCGCCATGC 
    GGTGTATCTC CTCAACCGGC TACCGACGAA GGCGATGGGC GATCGGACCC 
    CGTTCGAGGC ATGGACGGGG CGCAAGCCGC AGCTGGGACA CCTGCGGGTG 
    TTTGGGTGCA TAGCACACGC CAAGATCACG ACGCCCAACC AGAAGAAACT 
    TGATGACCGG AGCGCGCCGT ATGTGTATCT CGGCGTGGAA GAAGGCAGCA 
    AGGCGCACCG CCTGTTCGAC CCGCGTTGTG GGCGTATCCA TGTAAGTCGT 
    GATGTCATTT TTGAAGAAAA TGTACCTTGG CAATGGAGTG TAGTCGCAGG 
    GGAGCAAAAC TCTACCGAGT TCACGGTGGA GGAGGATGGA GTTGATGCAC 
    CGCCGGCAGG AGCGCCGGCC TACCCAGTAC CGCGGTACCG GGCGCCATCC 
    CCGGCAGTCC CGCAATCGCC TCCGGCAAGC CCGGTAGGGG CGTCATCGTC 
    ATTGCCGACT TCGCCCCAGT CATCACCGAG CTCTACACCG CCTTCAACAC 
    CTGCTACCGG CTCTGCCGGG CCGGTGGCGT CACCAGGTTC CGGCGGCGAC 
    CTTAGAAGCG ATGAGGGTCC CGTCCGGTTC AGGAGTCTTG AAGATATCAT 
    GCGGGAGGCA CCCCGCGTGG ACCTGGTGGA GGATGAACAC GATGGGGACG 
    CGCTGCTTGC AGAGATGGAG GAGCCATCGA GCTACCGCGA GGCAGCTGGC 
    CAGCCGGCAT GGGAGAACGC CATGGCACAG GAGCTGCAGG CGATTGAGAA 
    GAATTCAACA TGGGCTCTCA CTGCATTGCC GGCAGGACAC AAACCCATTG 
    GCCTCAAGTG GGTGTACAAG CTGAAAAAGA ACACTGCCGG CGAAGTAATC 
    AAGCACAAGG CTCGTTTGGT TGCAAAGGGC TATGTTCAGC GTCAAGGGGT 
    GGATTTTGAA GAGGTGTTCG CGCCAGTGGC GCGGCTTGAC ACAGTTCGTG 
    TCATCCTGGC TATCGCAGCT GATCGGCGGT GGGAAGTGCA CCACCTCGAC 
    GTCAAATCGG CGTTCTTGAA TGGCGATCTT GAAGAAGAAG TGTACGTAGC 
    CCAGCCAGAG GGTTTTGTGA AACGAGGAGA AGAACACTTG GTGCTCAGGC 
    TGAGCAAGGC GCTCTATGGA TTGCGCCAGG CCCCGCGGGC GTGGAACACG 
    CGTCTCGACA AGTGCTTGAA AGAACTCGGT TTTGCACGGT GCACGCAGGA 
    GCAGGCCGTG TATACTAGAG GAAAGGGGCA AGCTGGTGTA ATCGTTGGTG 
    TGTATGTTGA TGACTTGATT GTCACAGGAG AAAATCCACA TGAGATAGCC 
    ATGTTCAAGC AGCAGATGAT GGGGGAATTT GAGATGAGTG ATCTCGGTCT 
    TCTCTCTTAC TATCTGGGGA TAGAAGTAAT TCAGGGGGAG AATGGGATTG 
    CTATCAAGCA AGCTGCGTAT GCGAAGAAGA TTCTGTCTCA GTTTGGTATG 
    CAGGGATGTA ATCCCACCTC AATCCCCATG GAGCCACGGT CGCTGCTGCA 
    CAAGGATGCT GATGGAAATC CAATTGATGC GACCGAGTAC CGGCGTGTCA 
    TCGGGTGCCT GCGATACTTG TTACACACCA GGCCGGATCT GTCCTACGCC 
    GTTGGCGTGG CGAGCAGGTT CATGGAGCGG CCGACAACGA TGCATCTCAA 
    GGCGGTCAAG ATGATACTCA GATATCTAAA GGGGACGCTG GACTCTGGTC 
    TGGTGTTTGC AAGCGGCAGT GGCTCGTTGG ACATCACGGG TTTCACTGAC 
    AGTGACTTGG CAGGTGACAT GGATGACCGT CGGAGCACCG GCGGCATGGC 
    GTTCTATGTG AACAGCAGCT TGGTGTCTTG GTGTTCTCAA AAGCAGAAGA 
    CAGTGGCGCT CTCGTCTTGC GAGGCAGAGT TCATGGCGGC CACTGCAGCA 
    GCATGTCACG CGCTCTGGCT TAGGGCGTTG CTGAGCGAGA TGATGGGTAC 
    TGAAGCAAAG CGGGTGAAAC TTTTTGTTGA CAACAAGTCG GCGATCGCCT 
    TGATGAAGAA TCCTGTGTTC CACGGGAGGA GCAAGCATAT TGATACCCGC 
    TACCATTTCA TTCGTGAATG TGTTGAGAGT GGGCAGATTC TGATTGAGTT 
    CGTTCGTTCT GAGGAGCAGC GAGCAGATGC AATGACAAAG GGACTGCCGG 
    CGGCGAAGCT GGCGACTGCA CGGCACCTGT TGGGTGTGCG TGATCTCAGG 
    CCACGCCAAG ACTAAGGGGG AGTATGTTGC AGTTATTCCT GGTGTGGCCC 
    GAGCTGATCC GGACGACGCG GGAATGCAAC GGTGTGTAAC GGTGTGGCGA 
    GATGCCCGGG CAAAGGAGAT CGGTGGCGAC TAGTTCTTGC AGCGCAGGAA 
    GCGCGATGAA GCAGAGTGCA TGACGGGGAG TAACCTCGTC GTTTCCACAT 
    TTGTAGGATC AAAGTTGTTA GCCTATAAAT AGTTGGTGGT AACAGAATTT 
    GTACGCGCGC ATTCAGTTTT CATTTCAGTT CGAAATAAAC ACCGAAAGTT 
    GCCC

    Gene models with high sequence identity

    1. AT4G23160.1 [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 8
      E-value: 5e-93; Score: 340.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Reverse transcriptase, RNA-dependent DNA polymerase 2.7e-99
    HMMPfam Integrase, catalytic core 6.9e-30
    PatternScan EGF-like region, conserved site 0
    Gene3D no description 2.1e-36
    ProfileScan Zinc finger, CCHC-type 9.62
    ProfileScan Integrase, catalytic core 27.953
    HMMPanther GAG-POL-RELATED RETROTRANSPOSON 0
    HMMSmart Zinc finger, CCHC-type 0.0033
    superfamily Polynucleotidyl transferase, ribonuclease H fold 3.3e-48
    superfamily DNA/RNA polymerases 4.7e-34
    superfamily Retrovirus zinc finger-like domains 1.3e-06

    See the detailed result >

    AT4G23160.1

    Model type
    Protein coding
    Short Description
    cysteine-rich RLK (RECEPTOR-like protein kinase) 8
    Curator Summary
    Encodes a cysteine-rich receptor-like protein kinase.
    Computational Description
    cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (CRK8); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Reverse transcriptase, RNA-dependent DNA polymerase (InterPro:IPR013103), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (TAIR:AT4G23140.1); Has 131284 Blast hits to 128961 proteins in 4748 species: Archae - 114; Bacteria - 13787; Metazoa - 45525; Fungi - 11866; Plants - 40839; Viruses - 427; Other Eukaryotes - 18726 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR