K38730

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38730

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38730

Determination of introduced cDNA(s)

  • J023014N04 - Rice Full-length cDNAs - Original: J023014N04

    full reading [+] show sequence

    Nucleotide sequence: J023014N04 - full reading 
    GACCTCAAGA ACCCTAGACA ATTGGCGACC TCGAAAAGCC CTAGAGCCGT 
    CTCCAATGGC GGACCACCAG CCCGCCGCCT CCTCCCCCAA GAGGAAGAAG 
    AAGCACTCCA AGAAGCCGGA GGACAGCAAT GCCACCGTCG ACGACTCCCT 
    CGCCGCCGCC GCCTCCCCCT CCCCCAAGAA GAAGGAGAAG CACTCCAAGA 
    AGAAGCGGGA AGCCATCGAT GCCACCATGG CCGCTGCCTC CCCCAAGAAG 
    AAGGAGAAGA AGCACTCCAA GAAGCAGGAA GACACCAATG TCCCCGAGAA 
    GAAGCGGGAA GTCGTGCATG TCACCGTGGA CGCCTCCCTC ACCGGCGCCG 
    CCGCCGCGGG CGCAGCCCCC GTCGTCGCCT ACTTCCCGAC CGGCTACGAC 
    CCCCTGGCCG CCGGCGGCGG CAGGAAGGGT AGAGAGGCCC CCCGCACGAG 
    GCTGTTCCGC CACACGAAGC ACCCATCCCG CATCGAGCTC GTGGTCGGCG 
    CCGCCACTGG TGGCGGCGGA GGGCCGGACT TCGTCGGGCG GAGCTACGCC 
    GGCGAGGCCG TGCTGCCGCA GCTCACTGGC TACGCGCTCG GTGTCCTCGA 
    CAAGGCCTCC GGCACCCTCA AGGTCGTCCC CATCGCCGCC AACAAGAAAC 
    TGGCGCATTC GCAGCACTCT GGGGCAGTAG GGGAGGCAGT ATCATCAGCA 
    GGAGATGCTG ACTTGAAGGT ACAGGATATT ACCAAGGCGT TTGGAACCCA 
    GAAAGACAAG GCCAAGGATA TTAAGTGGCA GTCATTAAAT GAACAAAGGA 
    ATGATCCTTC TGCTTTTATG GACCTTGACC TTGGGAATGC TGATACCAGT 
    GTGGGTGCTA ATGAAAGTCA AGAACCAACT GTACGGAACA TTCCACCTTA 
    TGATCCTGCA GCAGATACAT CAGAAAGGGC ATATCTTTTT GATGAGATTA 
    TTCCAAAGAG TATAAGGCCG CACCTTGTGG ATATTATAGG ACATTTTGAG 
    TCAGGAGAAA TTTCTTCAAA AGGCTATGGG AGTTTTGTGT CAAATCGTGT 
    TAATAAATTA CAGGAGCTTC AGGGTGAAGA TAAGGAGAGG CTTGCTTGGA 
    TACTGTCCTA CATCACACAT CTCCTATCCC TGCTGGCACG GAACAGCTCC 
    ATGTCCAAGC GGCACAGAAA GGAAAACCAG GCTACCAGTG GACCAGTGAT 
    CCCACAGTAT GTATATCGTA AGATGGTGCT AATGTTTACG GAACCAGGAT 
    CTAGCGCCTT GTCAACAGAG AAACACGAGC TTCTGATCAA CTACATTCTC 
    GTACTCACGC TCTACGCTGA TGACTTCAGA TCCGACCCTA AGGATATATG 
    TGAAGACCTG AAAATGACCC GCCAGATGAT TAAACCATAT TATGACCAGC 
    TGGGATGCAA ATCTTCGTCG GCCGGTGCAT TTAAATCCTC TGTAATGACA 
    CTTCCAGCTC CCCTCAAGTT CCCAAAAGAA GCTACAAGGA GAAAGCGACG 
    AAGGTTCTGA TCATCTCAGA AGGATCTTTA GCCTTATCTG AATGTGGGTG 
    TGATAGGAAA AGATTGTTCG AAGTTGGGCC TGAGTTTATG CATGCTCAGC 
    CCAGCCTTCC GAATTACTGA AACATGTGGA ATATGGCTTT TGCCTTGTTT 
    TTGTTTCCCC TTGTCACCTG GAGTTGCTGT CACAAAGGCA GAATATTGTT 
    TATGTATTGA TGACATTTTT TAACCCTTTT TTTTTCTCAT CTTGCCTACC 
    AGAATTTACA TTGAAGATAT CTAGCG

    Gene models with high sequence identity

    1. AT3G13940.1 [+] show detail - DNA binding;DNA-directed RNA polymerases
      E-value: 8e-39; Score: 159.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G13940.1

    Model type
    Protein coding
    Short Description
    DNA binding;DNA-directed RNA polymerases
    Computational Description
    DNA binding;DNA-directed RNA polymerases; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase I associated factor, A49-like (InterPro:IPR009668); Has 222 Blast hits to 222 proteins in 107 species: Archae - 0; Bacteria - 2; Metazoa - 66; Fungi - 105; Plants - 33; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR