K38804

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38804

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38804

Determination of introduced cDNA(s)

J033025F17 - Rice Full-length cDNAs - Original: J033025F17

full reading [+] show sequence

GGCCGTCTCT GAGCCGCGCG GCCTCCACAC CACCCATGTT GGCTTGCGCT 
TCCCTCGCAA GGTTTAGTCG GCTCGCTCGC CCTCTATGCG CCGCGGGTTC 
CGCGCCGCGC TTCCTCCAGG GATCTGTTAA TCAAAATAGT TTCACTCACT 
TGTAATGAAA GGTGCACAAG GAGCCTCAAA TAATTCGGCA AAACACAAGA 
AAAGAAAGTC TGCTGTGCAG AGATGGAGGC CAATCTCCAC AGAAGCCGCT 
GCTCCAAAAG CTGACCTTAA TGAGATGTCA GGTCCTGTAA GCAAACAAGT 
GGAAGAGAAT TCAGCCTCAG ATGGAACAAC TAATGTTGTT ATTGAAGTTT 
CCACCTACAA CGCATCCTTG CCAGAAAATA AATTAGCCAC AGAAGATACT 
ATGGAGGATG CTAGCTTCAA TAAGGACATA GATAGGTCCA ATCTATCTGA 
AAAGTGTTCC TCTTCTGTTC AGGTAGATGC TCCTCTGATG CGCTTTGTGA 
AAGGAAAAGG TGGAACCATG CAGAAGCAGA TTGAAGATGA AACTGGGGTC 
AAAATTATAT TTCCATCTTC TAAGGAGGAA ACATGTGTTG TTCTTGAAGC 
TAAAACTACT GAAGATATTA GAAAGGCTTC AGAGAAAATT GCAAAGGTTC 
TTGAAGAGGC CGTGAAAAGT CCAATACTAG ATTACTCTCA CTTCATTTCG 
CTTCCATTGG CTATCCACCC AAGCCTTGTT GAGAAGCTGA ACCACTTCCA 
GTGCTCAATC CTTGGGACTT CTTCTAATGT AGATAGTGAT AAGGGTGAGG 
ACCTAAGTGA AGGTTCTATG GATGAAATTG ACCATGAACA GAAGCAAGAA 
AGGAGCCCTA GTGTTTCAAT AAAGATGCAA GCCCATGAGG AGTCTGTCAG 
AGTTAAAATG GATATTAAGG GCTCCCAACC AGACTTCGGC ATTGACAAGT 
CAATATTTAT TAAACCCAAA ACCTTTCACC TAACGGTTCT TATGTTGAAG 
CTATGGAATA AGGATCGCAT TGCTAAGGCT TCTGATGTGC TCCAGTCAGT 
ATCGTCCCAA GTAATGGAAG CCTTGGAAAA CCGACCAATC TCCATACAAC 
TTAGAGGTCT GACATGCATG AAAGGCTCAC CAGCTAGGGC CAGGGTAGTA 
TATGCTCCTG TGCTGGAAGT TGGTGAAGAG GGACGCCTAC AACGTGCTTG 
CAAAGTTATA ACTGATGCCT TTGTCAAGTC GGGCCTAGTA CTTGAAAGGG 
ATGCGAGGCA AGAATTGAAG TTGCACGTGA CCATAATGAA TGTGAGGCAC 
AGGAAGAGCA AGAGATGGAA CCAAAGAAAC GACTCATTCG ATGCTCGGAA 
TATTTTCAGA AAATATGGGG AACATGACTG GGGCGAATAC CTCATTCCCG 
AGATCCATCT TTCGCAGCGA TTCAAGTTCG ATGAAAGAGG GTACTACTAC 
TGCTGCTCTT CAATCCCCTT GCCTGCGGCG GAGATGCAAA CGGAGTGAGT 
TTCATAATAA ACACATTTTC AGTGTTTTCA AATCTTTCAC CAGTATCATC 
ATCCCATTAG GACGACTTCG CGGGTTACTG TTGCTGAACC AATAATGTGC 
CATGTGTTGT GCTTGTTTTG TTCTGGAGTG TGGCATGCTC AGTCTACTCG 
GTTGATATAG GCCTTTCTTT TGATAGTGGG ATAGCCGGAT AGGCAATTAT 
GCATCATGCT GTGGACCTAT GGTGTTGTCA ATGGCAGTGG GCTCCTTGGA 
GTGGTTGATG TAAGTTTCTG GTCTGGCCCG TGTACAATCA CGCCTGCAAT 
TTTCTCTGTC GTTGCCCTG

Gene models with high sequence identity

AT3G16230.2 [+] show detail - Predicted eukaryotic LigT
E-value: 9e-104; Score: 374.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	K Homology	1.8e-07
HMMPanther	UNCHARACTERIZED	0.00019
HMMPanther	RNA-BINDING PROTEIN RELATED	0.00019
superfamily	Eukaryotic type KH-domain (KH-domain type I)	3.7e-11
superfamily	RNA ligase/cyclic nucleotide phosphodiesterase	9.3e-08
ProfileScan	K Homology, type 1	11.07
HMMPIR	Predicted eukaryotic LigT	2.1e-07
HMMPfam	AKAP7_NLS	3.7e-16
HMMPfam	K Homology, type 1, subgroup	4.5e-09
Coil	coiled-coil	0
Gene3D	no description	6.1e-06

See the detailed result >

AT3G16230.2

Model type: Protein coding
Short Description: Predicted eukaryotic LigT
Computational Description: Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1).
Link: InterPro Scan - TAIR