K38810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38810

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38810

Determination of introduced cDNA(s)

  • J013020B13 - Rice Full-length cDNAs - Original: J013020B13

    full reading [+] show sequence

    Nucleotide sequence: J013020B13 - full reading 
    GGGCTAAAAC CCACATTATC CTCAGGCGCA ACCGCGCTCT CCGTTCTTCC 
    TTCCACCCCA ACTCGCCATG GCGCTCGCCG CCGCCTCCGT CTCAGTTCTC 
    CATCTCCCGG CCATCTCCCT CCCGCTCCCT TGCCTTCAGG GCTCAAACCC 
    TAGCCGTCCC AGCCTCGGCT TGACCAATGC CCTCCCGTGG CGCCGACGCG 
    GTGGGCGCGG GGCGGGGGCG GTGGCGGGGG CGGTGCGCTG CGCGAAGCGC 
    ACGGGCAAGC GGCGGTACCC GTCGGAGAAG AAGCGGCGGG TTACTGGCGG 
    CTCTCCAAGC TCGCCGTCCC TGCCCGCGAC GACCCCGGCA AGGACTTCGC 
    TGGTGTCTCC CCGCCGCTCC TCCAAGCCAT CGCCAAAGCA CTGAAATTCC 
    CGGTTTCTTC TATGCTCCCT GAAGAGGCCT TCACCGTTAT TCGCAAGTCG 
    TTTGATGCAC GGAAGATTTT GAAAGAACCT CAATTTGTTT ATACCGTTGA 
    TGTGGCTGTT AAGAGACTTC TGGATTTGGA GCCGAGAACG TGGGATTTTA 
    TTGCTAGATT GGAACCAAAG CTTGGAACAA TAGAATACAT GCCTGATGAG 
    AAAGTAGCAT CTGATCTGGT CAGTATGCTT AATGTTTATA AGCAAGGTTC 
    TGATGGTGAA CTGGGAATCA ATGATACTGT CAATAATGGC TCTATCTGTA 
    GTCCGCGAAA GAAACCAAGG GTGGCAGTTG TAGGAAGTGG GCCATCAGGC 
    TTGTTTGCCT CCCTTGTTCT AGGTGAACTT GGTGCAGAAG TTACCTTAAT 
    AGAGCGTGGT CAACCTGTTG AACAAAGGGG GCGTGATATT GGTGCCTTAG 
    TAGTTAGACG AATTCTCCAT TCAGAAAGCA ACTTTTGCTT TGGAGAGGGT 
    GGTGCAGGTA CATGGAGTGA TGGGAAACTT GTGACCAGGA TAGGAAGAAA 
    CACTGATGGT GTTCAGGCTG TTATGAAAAC ATTTGTTCAA TTTGGAGGTC 
    CTCCAAATAT ACTAGTTGAT GGGAAACCTC ACTTGGGTAC AGATAAACTT 
    GTTCCTCTGC TGCGGAACTT CAGGCATCAC TTAAAAGAGT TGGGTGTTAA 
    CATAATATTT AATACTAGAG TAGATGATCT TGTAGTGGAA GGTGGGCAAG 
    TAAAAGGAGT TGTCGTGTCT GACTCAAGAC TGCAGCTAGG TTCTCCCAAC 
    CAGACACTAT CATTTGATGC AGTGGTATTG GCAGTTGGTC ACTCAGCTCG 
    TGACACATAC AGTATGCTTC TGAGGCATAA TGTAGATATG CACCCAAAGA 
    GTTTTGCTGT TGGCTTAAGA ATCGAGCACC CCCAAGAACT GATAAACGAC 
    ATTCAATACT CTGAATTGGC TGCTGAAGTA CATAAAGGGC GTGGGCGGAT 
    ACCTGTAGCA GATTACAAGA TAGTGAAATC TTTTGGTGAA GGAGATGCAG 
    AGCTACCAGA ACAAAATCGC AGTTGTTACT CATTTTGCAT GTGTCCTGGT 
    GGACAGGTTG TTCTAACTAG CACAAACCCA TCAGAATTGT GCATCAATGG 
    TATGTCATTC TCAAGGCGTG CATCCAAGTG GGCAAACTCA GCTTTTGTGG 
    CCACTGTGTC ATCTCATGAC TTTAGGCCAT TTGAATCCCA TGGTTCTCTT 
    GCAGGCGTTG AATTCCAGAG AGAATTTGAA AGAAGAGCAG CTACCATGGG 
    GGGAGGGAAT TTCGTTGTTC CTGCACAGTG TGTCACAGAT TTTCTCAGTA 
    ACAGATTGTC AGTTACAACT CTCCCACCAT CAAGCTATAG GCTGGGAGTT 
    CGGCCATCCA AACTCCATGA GCTATTCCCT TCGCACATAA CTGAAGTTCT 
    ACAACAATCA ATAATAATGA TTGAGGAAGA GATGCCAGGA TTTGTATCTA 
    GTGAGGCATT ACTTCATGGT GTCGAGACAA GAACAAGCTC CCCATTGCAA 
    ATTTCACGAA ATACCGGTAC ATATGAGAGC ACATCACTGC AAGGGCTGTA 
    TCCTATTGGG GAAGGTGCTG GCTATGCAGG GGGTATATTA AGTGCTTCTG 
    TGGATGGTAT GTATTGTGGT TTTGCTTTAG CCAAACAGCT TTCTCTATTC 
    CATGGCGATA TAGAGTCAAC TCTTGGCAAA GCACAAAACC AAAAAGGCTT 
    CGTAAAATAT TGAGTATGGA TGCGTAATTA GTTGATTGTA GGTATCAGAT 
    ATTGAAAGAT AAATTCACCG TGGTAGCAAA TTGCCTAGGA AAACTCCTTA 
    TGTAGAGAAG TTGTAATGAG TGCAGTCATA GAAAATATTG AGCGAGTATG 
    TACTATGTAA ATGACATCAA AGGTGCTATA GGATAATAGG AGTCTATACC 
    ATGTCGCTAT GTAATAAACT AGTGAAATTT CTAGGCTAGG AATAACAATA 
    TAATAATTAA CTTAGAGGAC GGCATTTTAA TCTTGTAGAT TATTCAATAA 
    TGCTGCCCAC AAATTTTATG TGC

    Gene models with high sequence identity

    1. AT4G30720.1 [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
      E-value: 0; Score: 834.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 3.3e-07
    superfamily FAD/NAD(P)-binding domain 5.7e-27
    FPrintScan Adrenodoxin reductase 1.6e-05
    FPrintScan Adrenodoxin reductase 1.6e-05
    Gene3D no description 2.7e-08

    See the detailed result >

    AT4G30720.1

    Model type
    Protein coding
    Short Description
    FAD/NAD(P)-binding oxidoreductase family protein
    Curator Summary
    Encodes a putative oxidoreductase/electron carrier detected in the chloroplast stroma that is essential to ensure a correct electron flow through the photosynthetic chain and, hence, photosynthesis efficiency and normal growth. Mutations in the Col-0 allele result in pale green pigmentation and defective growth.
    Computational Description
    FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity, FAD binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Adrenodoxin reductase (InterPro:IPR000759), FAD dependent oxidoreductase (InterPro:IPR006076), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); Has 2466 Blast hits to 2466 proteins in 951 species: Archae - 126; Bacteria - 2117; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR