K38850

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38850

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38850

Determination of introduced cDNA(s)

  • J023131F23 - Rice Full-length cDNAs - Original: J023131F23

    full reading [+] show sequence

    Nucleotide sequence: J023131F23 - full reading 
    GATTCCTCTG CCTCTCCTCC TCTCTCTCCG CTCTCTCTCC TGCCAAGCGA 
    CGGCCGCCGC CGCTGCTTGC CGTCCCCCTC ATCCTCTTCT TCCCGCAGTT 
    GGCGACCTCC CCCGCGCACT CCCTACTGCG AGCCGCTGCT GTCGCCGTGC 
    CGTCGTCCTG CCATCGCCAT CCTTTCGCTC CTCGCCGGCA GATCCGGCCG 
    CCCTGAAGCG GGGGAAGCCT GGAGCCGCCC TCTACTCTTC TCCCTCTACG 
    CCCGGCACAG CCCCTCCCTC TCCCTCTCCA TCTTCATTTC CGGATCGATG 
    GATGCCTGTG ATTAGGTGGC CTAGGGCTCA TGGTTGACGG CGTTGGTTGA 
    TCCGGCGGCG CAGCACACGA TCTGGTGGTG GTGCGACGCA AAGGGATCGA 
    CACAGTTCAG CCAAGCAAGG CAGATATCTG CATCTCAGCA GCTACATGCG 
    CATCCAACCT CTGCCATCAG GCTTTGTACG GAAGCCTGAT TTCTTGCATT 
    CTTCTTCATT AACCTACCCT CTATTTCTAT TGGTGATGTA GTAGCAGATT 
    GTTGGTAAGG TACAGGGACG CCCAGTTGCT CCGAAAGATT GTCTTCGCCC 
    GCAGCCCCCT GTTGCTGTCT TGAGCTCCTT GGTCAGTTCA GTGCCTTCTT 
    TAATGTTTGT TTCTCCAATA TTTGAAGAGT GGTGATGGAT AGAAATAGGA 
    AATGAAAGAA GCCGCTTTTG AGAGCCAATC TGGAAGATTG AAAAAATGGA 
    TTGCTTGAAG AACAGAAGAC ATTGTAGGAG TTCTCTTTGT ATGGCTACAA 
    CAAGATGGTT GTTGTAGCAC TGAGCATCAG AAGTCATTGT TGCCAAACTC 
    ATAATCTGAA TGGCCATGAT CTGCCAATGG AACTCAACAG CTCATCAGTG 
    CTAATTACCA GAGGAGATAA TGAAGTGAAG GCTTTGGTTG CTCCTGCATC 
    ACTGCTTGCC CATAATGCTG AATTGGAGGG GAAGTGGTGG TTCAGAAGAT 
    CGAGGACAGT GAGTGTAAAG TCAGTTACAA TGCGATGAAC ATTAAGTATG 
    AGAACTCGAT CAAGGCAAGT GTTATCAACC CAGCTAAGGT GAGAAGATGC 
    ATGCTCCAGA ACGCAGCCTG AGTGGTTGCA ATGGTCCTCA CCTTACAGGC 
    CATTGTTATT GAGCAGCCGA AGCCCAAGGC TCCTGTTTAT CAGCTAACAG 
    AGGGAACCAA CACACTATTT CAGGATAAGC CACATGACAT GCTGCCAAAA 
    ACCTGGTCAT GTCAAGGACA AATCCTGACA CCCGGTAGGT GTTTGCTACA 
    CATGTCACTC CTATCATTCT TGTTATATTG CAATTGTCAA GAGAAATTAA 
    GCTTTGGAAT AAGTGTGGTT ATCTGATTTA CATATGAGTG TGTTGGGTTG 
    TGGGGATATT CAACAAATAA TGGAGTCGCG AGTCTGTACT TGTCAAGAAG 
    CAGCGATAGA TTCAATGGAG GCATTAGCAC TTGGATGGTC TTACAAGAAT 
    TTAGTGCAAT GGATATGTGC CTTTTATTCT CTTATAAAAT TGCCAGTTTG 
    TTTGCC

    Gene models with high sequence identity

    1. AT2G28000.1 [+] show detail - chaperonin-60alpha
      E-value: 2e-19; Score: 26.90

     

    InterPro Scan Digest

    See the detailed result >

    AT2G28000.1

    Model type
    Protein coding
    Short Description
    chaperonin-60alpha
    Curator Summary
    Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development.
    Computational Description
    chaperonin-60alpha (CPN60A); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, chloroplast organization, embryo development; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G18820.1); Has 33896 Blast hits to 33887 proteins in 8716 species: Archae - 792; Bacteria - 21835; Metazoa - 1656; Fungi - 1573; Plants - 797; Viruses - 2; Other Eukaryotes - 7241 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR