K39002

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39002

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39002

Determination of introduced cDNA(s)

  • J033076N21 - Rice Full-length cDNAs - Original: J033076N21

    full reading [+] show sequence

    Nucleotide sequence: J033076N21 - full reading 
    GGTCTCCTCT CCCTCCGTGT TGCTCCCTTC TTCTTCTTCT TCTTCTTCTT 
    CCCCCTCTCA TGTTCTCATC GTCGGCCATG GAGAGAAGGA GAAGAAGCCC 
    GTGCGCCGCC GTCGTGATGG CGGCGGTGGC AATGCTCGCC GTAATGCCGG 
    CGTTCCCCGG CGTGGCGGCG GACTTGTCGG CGGGGTACTA CAGCTCGTCG 
    TGCCCCAAGC TGGAGTCCAT CGTGCGGTAT GAGGTGTCGA GGAAGATCAA 
    CGAGACGGTC GTCACCATCC CGGCCGTCCT CAGGCTCTTC TTCCACGACT 
    GCCTCGTCAC GGGGTGTGAC GCTTCGGCCT TGATTTCGTC CCCAAATGAC 
    GACGCCGAGA AGGACGCGCC GGACAACATG TCCCTCGCCG GCGACGGCTT 
    CGACACCGTG AACCGTGTCA AGACCGCCGT CGAGAAGGCC TGCCCCGGCG 
    TGGTCTCCTG CGCCGACATC CTCGCCCTCG CTGCCAGAGA CGTCGTCTCC 
    CTCGCGTCCG GGCCATGGTG GTCCGTGGAG CTCGGCCGGC TGGACGGCCT 
    CGTGTCCAAG GCGAGCGACG TCGACGGCAA GCTGCCCGGG CCGGACATGC 
    GCGTGACGAA GCTCGCCGCC GTGTTCGACA AGCACGGGCT GTCGATGCGC 
    GACATGGTGG CGCTCTCCGG CGCGCACACC GTCGGCTTCG CGCACTGCAC 
    CCGCTTCACC GGCCGGCTGT ACAACTACAG CGCCGGCGAG CAGACGGACC 
    CGTCCATGAA CAAGGACTAC GCGGCGCAGC TGATGGAGGC GTGCCCGCGC 
    GACGTCGGCA AGACCATCGC CGTCAACATG GACCCCGTCA GCCCCATCGT 
    CTTCGACAAC GTCTACTACT CCAACCTCGT CAATGGCCTC GGCCTCTTCA 
    CCTCCGACCA GGTGCTCTAC ACCGACGGCG CGTCGCGGCG CACCGTCGAG 
    GAGTTCGCCG TCAACCAGAC CGCCTTCTTC GATGCCTTCG TGAGCTCCAT 
    GGTCAGGCTG GGGAGGCTAG GGGTCAAGGC CGGCAAGGAT GGAGAGGTCA 
    GGAGAGACTG CACTGCATTC AACCACTAGA TGGAAAGCAG CGGCAGATTG 
    TAATTCAGAA ATGTGTTGCT CTGATGAGTT TGATACATAT AATGAGCTTG 
    ATTCTTTTGC ATACAGTTTT CCAAAAGTTT GAGTGTGTTT TCTTACTTCT 
    TTTTTTCTTT CTATGTGCTT ATTTTTTTCG ATGAATTTTT GTACAGACTG 
    AAGAGTGTAA TACGTACAAT GGATACATTG AGGATTCTCT ATTGAAATGA 
    TTAACAAGAT GGATAGGGCT AATAAAAAGG AAATTAGTTT GACTT

    Gene models with high sequence identity

    1. AT4G37520.1 [+] show detail - Peroxidase superfamily protein
      E-value: 3e-96; Score: 349.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Haem peroxidase 7.4e-107
    Gene3D no description 8.3e-54
    ProfileScan Haem peroxidase, plant/fungal/bacterial 76.111
    FPrintScan Plant peroxidase 2.5e-53
    FPrintScan Plant peroxidase 2.5e-53
    FPrintScan Plant peroxidase 2.5e-53
    FPrintScan Plant peroxidase 2.5e-53
    FPrintScan Plant peroxidase 2.5e-53
    FPrintScan Plant peroxidase 2.5e-53
    FPrintScan Plant peroxidase 2.5e-53
    FPrintScan Plant peroxidase 2.5e-53
    FPrintScan Plant peroxidase 2.5e-53
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.2e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.2e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.2e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.2e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.2e-28
    PatternScan Peroxidases heam-ligand binding site 0
    HMMPfam Haem peroxidase, plant/fungal/bacterial 4.6e-72

    See the detailed result >

    AT4G37520.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G37530.1); Has 4636 Blast hits to 4606 proteins in 315 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 258; Plants - 4294; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR