K39122

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39122

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39122

Determination of introduced cDNA(s)

  • J013112O12 - Rice Full-length cDNAs - Original: J013112O12

    full reading [+] show sequence

    Nucleotide sequence: J013112O12 - full reading 
    GAGCTCAAAA CCCCGCAACA ACCCAACCCT CGTGACCAAC CCATCTCCCC 
    ACCAACCCCG GCCGCCGCCA TGACCGGCGC CGTCTCCAAG CTCGCCGCCC 
    CGAGGCCGGC GGCCGCCGCG CCGCTCCCGC CGGCGTCCGT CCGCTCCGCG 
    TTCCTCGCCT CCGCCCCCTC CCCGCGCCGC TTCTCCGTCT CCATCGCCGC 
    CGGCCGCGCC AGGAGCCCCA TCATTGCGAT GGCTTCTGAC AAGGAAGGAA 
    ATGGTGCCCC AACGAAGAGG ACAACCCTTC ATGATCTCTA TGATCTCCAG 
    GGTCAGTCCC CGTGGTACGA CAACCTCTGC CGTCCTGTCA CCGATTTGCT 
    GCCCCTTATT GGCAGCGGCG TCCGTGGAGT CACCAGCAAC CCATCAATTT 
    TCCAGAAAGC CATCTCGACT TCCAATGCAT ACGATGACCA GTTCAAGCAG 
    CTTATATTAG CTGGAAAGGA CGCAGAGAGC GCTTATTGGG AACTTGTCAT 
    CAAGGATATC CAAGATGCGT GCAAACTTTT TGAGCCTATC TACGACCAGA 
    CCGATGGGGC AGATGGGTAT GTTTCTGTGG AGGTCTCCCC TAGGCTGGCA 
    AATGATACCC AGGGAACTGT TGAAGCTGCA AAATGGTTGC ACAAAGTGGT 
    CGACAGGCCC AATGTCTACA TAAAGATCCC TGCTACCGCA GAATGTGTTC 
    CTTCTATCAA GGAAGTTATT GCTAATGGCA TTAGTGTCAA CGTCACACTT 
    ATCTTCTCGA TTGCAAGATA CGAGGCTGTG ATTGATGCTT ACATTGATGG 
    ACTTGAGGCC TCTGGTTTGA GTGACCTATC CCGAGTGACC AGTGTAGCGT 
    CCTTCTTTGT CAGCCGAGTT GACACACTTA TTGACAAAAT GCTCGAGAAG 
    ATCGGAACAC CTGAGGCACT TGCCCTCAGA GGAAAGGCTG CTGTAGCACA 
    GGCAAAGCTA GCCAACCAGC TTTACCAGAA GAAATTCTCT GGCCCGAGGT 
    GGGAGGCTTT GGTCAAGAAA GGTGCCAAGA AGCAGAGGTT GTTGTGGGCA 
    TCTACCAGTG TGAAGAACCC TGCATACCCA GACACTCTTT ACGTGGATCC 
    TCTCATCGGA CCTGACACCG TTTCTACCAT GCCCGACCAA GCTCTGCTGG 
    CATTCATCGA CCACGGCACA GTTTCGAGGA CAATCGACGC AAACGTTTCG 
    GATGCTGAAG GTGTATACAG TGCCCTGGAG AAGCTGGGTA TAGATTGGGA 
    TGAGGTTGGC AAGCAGCTAG AGCTGGAAGG TGTGGACTCC TTCAAGAAGG 
    CCTTCGACAG CCTGCTTGGG AGCTTGGAGG AGAAGGGCAA TTCCCTCAAG 
    AAGACCGTGA GCCTGTAGGT GCAAAGATAG CTGAAATGTT TTGAACGCTG 
    GCAATGGCAA GTGAACGATT ACTAAATAAA TGCTCTACCT TGCTGGCTCT 
    CTCCCTCTCT CAAACTCTCT TGTGATGTGC TGCTCTCGAA TTTCTGGGTC 
    AGCTTTTGTA TTCTAGGCGC TCTTGGCTGC TATTTGTGTA ACTGAGGTTG 
    CGAACTGCTA TGCATTTTCT GATAAATTGT TGGGCAAGTT GATTTCATGT 
    GTACATCTAG ACTGTAATTT TTTTTCTGGT CAACATTGCG AGACTGAATT 
    AATGATGCAT CTCGGAGAGG TTAAAATGAC ATGTAAAATA CTGTAATAAA 
    GC

    Gene models with high sequence identity

    1. AT5G13420.1 [+] show detail - Aldolase-type TIM barrel family protein
      E-value: 5e-179; Score: 624.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Transaldolase, active site 0
    HMMPIR Transaldolase, bacterial/plant type 2e-276
    HMMTigr Transaldolase subfamily 8.1e-108
    Gene3D Aldolase-type TIM barrel 2.1e-39
    HMMPanther Transaldolase 2.2e-08
    superfamily Aldolase 1.5e-69
    HMMPfam Transaldolase 1.7e-78

    See the detailed result >

    AT5G13420.1

    Model type
    Protein coding
    Short Description
    Aldolase-type TIM barrel family protein
    Computational Description
    Aldolase-type TIM barrel family protein; FUNCTIONS IN: catalytic activity, transaldolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transaldolase subfamily (InterPro:IPR004732), Aldolase-type TIM barrel (InterPro:IPR013785), Transaldolase, active site (InterPro:IPR018225), Transaldolase, bacterial/plant type (InterPro:IPR014634), Transaldolase (InterPro:IPR001585); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR