K39135

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39135

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39135

Determination of introduced cDNA(s)

J023022N21 - Rice Full-length cDNAs - Original: J023022N21

full reading [+] show sequence

GAGCCATTAG CAGCACATTC ACCGGCAGCA CACGCGCGCA CACATGGCCG 
GCTCGTCAGC CGCAACGTCG TGTGCTCGGT TCCTGGCATT GCTGGCGACA 
TGCCTCCTCT GGAACGAGGC CGCATCGTTC ACGGCGTCCG GCTGGAACAA 
GGCGTTCGCC ACCTTCTACG GCGGCAGTGA CGCTTCAGGA ACGATGGGTG 
GGGCGTGTGG GTACGGGGAC CTGTACTCGA CGGGGTACGG GACGAACACG 
GCGGCGCTGA GCACGGTGCT GTTCAACGAC GGGGCGTCGT GCGGGCAGTG 
CTACCGGATC ATGTGCGACT ACCAGGCGGA CAGGCGGTTC TGCATCTCCG 
GCACGTCGGT GACCATCACG GCGACCAACC TCTGCCCGCC GAACTACGCG 
CTCCCCAACG ACGCCGGCGG GTGGTGCAAC CCGCCGCGGC AGCACTTCGA 
CATGGCCGAA CCGGCGTGGC TCAAGATCGG CGTCTACGTC GGCGGCATCG 
TGCCGGTGAT GTACCAGCGG GTGCCGTGCG CCAAGCAGGG CGGGGTGAGG 
TTCACCATCA ACGGCAGGGA CTACTTCGAG CTGGTGCTCG TCTCCAACGT 
CGGCGGCGTC GGCTCCATCC AGTCGGTGTC GATCAAGGGG TCGAGGACCG 
GGTGGATGGC CATGTCCAGG AATTGGGGCG TCAACTGGCA GTCCAACGCC 
TACCTCGACG GCCAGAGCCT GTCGTTCAAG GTCACCAGCA GCGACGGCCA 
GACGCTCACC TTCCTCGACG TCGCCCCGGC GGGCTGGACG TTCGGCCAGA 
CCTTCTCGAC CTCACAGCAG TTCTCTTAAG TAATTAAATA TTAATGAGTT 
ATTACTGGTC CATTCATATA TGTGTTTAAT TCCGAGCGTA TATTATCATC 
GGCGTCGGCG TGTAAAGACT AAAGATATAT TACTAGTAGC TGTTTGGGTT 
GCCCACAAGT TTGGAGCATG CGCGCACAAG TGTTTGGTGT GGCGAGCTAT 
ATATATGATT TGCAAGCTAA GGACACCTGC TTTTTTCAAT GCGAATTAAA 
ACGGTATATA TATGTACAGT TTGCGAGGTG CTTGCCAATC GATGATCGGC 
ATGCTTTACT GTAACGACCA CACAGGGAGT TTTCACT

Gene models with high sequence identity

AT1G20190.1 [+] show detail - expansin 11
E-value: 1e-99; Score: 360.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	no description	1.3e-52
superfamily	Barwin-related endoglucanase	3.2e-43
superfamily	Pollen allergen/expansin, C-terminal	5.3e-34
ProfileScan	Expansin 45, endoglucanase-like	28.515
ProfileScan	Pollen allergen/expansin, C-terminal	22.12
HMMPfam	Pollen allergen/expansin, C-terminal	3.7e-27
HMMPfam	Rare lipoprotein A	3.3e-22
FPrintScan	Expansin	7.4e-72
FPrintScan	Expansin	7.4e-72
FPrintScan	Expansin	7.4e-72
FPrintScan	Expansin	7.4e-72
FPrintScan	Expansin	7.4e-72
FPrintScan	Expansin	7.4e-72
FPrintScan	Expansin	7.4e-72
FPrintScan	Expansin	7.4e-72
FPrintScan	Expansin	7.4e-72
FPrintScan	Expansin/Lol pI	4.4e-46
FPrintScan	Expansin/Lol pI	4.4e-46
FPrintScan	Expansin/Lol pI	4.4e-46
FPrintScan	Expansin/Lol pI	4.4e-46
FPrintScan	Expansin/Lol pI	4.4e-46
FPrintScan	Expansin/Lol pI	4.4e-46
Gene3D	Pollen allergen, N-terminal	1.2e-39
Gene3D	Pollen allergen/expansin, C-terminal	2.3e-11

See the detailed result >

AT1G20190.1

Model type: Protein coding
Short Description: expansin 11
Curator Summary: member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational Description: expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Link: InterPro Scan - TAIR