K39144

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39144

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39144

Determination of introduced cDNA(s)

  • J013091C11 - Rice Full-length cDNAs - Original: J013091C11

    full reading [+] show sequence

    Nucleotide sequence: J013091C11 - full reading 
    GACTTGCATA AAAGAAAATC CCCCGTCTCG TCTCCTCCGC TCCTTGTGCC 
    TGCGCCCATC GACTCCATCT GGCGACTCGC GAGAGCAGAG CAGGGGAGGG 
    GGAGGGGAAG GGCGCCGTCG TCCTGTTGTT CACTCCTGAC CTGCATCACA 
    TCTGGAGATG TCTTTCCGCA GCATAGTTCG TGATTTCAGG GACAGTTTCG 
    GGACTCTATC CAAGCGGAGT TTCGAGGTGA AAATTTCAGG CTTTTCGGGC 
    CGTCACAGAG GGAAATCCAT TGGACCATCA AGCGAGCTGG ATGACACGCC 
    CGTGGTAGCT CAGCAAAGCA AGTGGGCTGG TCTTCCTCCT GAATTACTTC 
    GCGACGTGAT GAAAAGGCTG GAGGAAGATG ATAGCAATTG GCCCTCCCGC 
    AAGGATGTTG TTGCCTGCGC TTCAGTTTGT ACGACTTGGA GAGACATGTG 
    CAAAGATATT GTCAGGAACC CTGAATTTTG TGGAAAGCTT ACATTTCCAG 
    TGTCTCTTAA GCAGCCTGGA CCTCGAGATG GAGTAATCCA ATGTTTCATA 
    AAAAGGGACA AATCAAAACT AACTTATCAT CTCTACCTGT GCCTTAGCTC 
    TGCTGTGCTT GATGAGACTG GAAAGTTCCT ACTATCAGCT AAAAGGAGCC 
    GGCGAACGAC ACACACTGAC TACATCATTT CTATGGACTC CAAAAATATC 
    TCCCGATCAA GTAGTGGCTA TATTGGGAAG TTGAGGTCAA ATTTCCTCGG 
    CACCAAATTC ATCATCTATG ACACGCAGCC TCCATACAAT GCTCGGACAC 
    TTTGCTCACA AGAACGGACG AGCCGTCGGT TCTCCTCTAG GAAAGTTTCC 
    CCAAAAGTTC CAACGGGTTG TTATCCCATC GTGCAGGTGA ATTATGAGCT 
    AAATGTGCTT GGAACCCGGG GACCAAGACG GATGCAATGC GCTATGCATT 
    CCATCCCAGC ATCAGCAGTA GAGCCTGGTG GCATTGTGCC TGGCCAACCT 
    AAAGAGCTCC TCCCAAAGTT ATTTGAGGAG TCCTTCCGCA GTATGGCAAC 
    TTCCTTCTCC AAGTACTCCA TCACAGATCA TTCGACAGAC TTCAGTAGTT 
    CTCGCTTCTC TGAGTTTGGG GGAGGGGCTC TGCAAGGGCA AGAGCAAGAG 
    CAAGATGGCG ATGATGTGAA CAAGGAGAGG CCTTTGGTTC TCCGGAACAA 
    AGCACCAAGG TGGCATGAAC AGCTGCAATG CTGGTGCCTC AACTTCCGTG 
    GCCGTGTGAC GGTGGCTTCA GTGAAGAACT TCCAGCTGAT AGCTGCTGCA 
    CCTCAGCCAT CTTCTGGAGC CGCCTCTGAA CCTTCACAGG CAGGGCAGGC 
    TGCACAACAG CAAACCCAAC CTTCTCAGCC ATCGAGTTCG TCGTCGTCGT 
    CATCATCCAA CCATGATACG GTGATCCTGC AATTCGGCAA AGTTGCAAAG 
    GACATGTTCA CCATGGATTA CCGGTACCCA TTGTCGGCCT TCCAGGCTTT 
    TGCTATCTGT TTGACCAGCT TTGACACCAA GCTGGCATGT GAATAAATGA 
    GTAGAATAGC GATCAGAAAG CACTCCAGTG TACCTGAGGA CCTAAGCCAC 
    TCCAGGCGTA TGGTATTTTA GGATAGGAGA ATTCTGTGTC TAGTCACTTG 
    TGTGTATTCA TGTGCAGTTC TTTGGTTGAA TCCTTGTGTT CCTCCGGCGT 
    GCGTGTTTGT TAGAAGTGTA AAAAGGGGAT TGAAGTGTAG ATGTCTGTAA 
    GATAGAACAA GATCTTGTTT CTTGTATGTT GGGCTTAAAA AGTTTTGAGC 
    AAGAGAATGA ATGAATGGTT GAGG

    Gene models with high sequence identity

    1. AT1G25280.1 [+] show detail - tubby like protein 10
      E-value: 2e-149; Score: 526.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Tubby, C-terminal 1.7e-98
    superfamily Tubby, C-terminal 3.4e-105
    superfamily F-box domain, Skp2-like 5.4e-06
    PatternScan Tubby, C-terminal, conserved site 0
    PatternScan Tubby, C-terminal, conserved site 0
    HMMPanther TUBBY-LIKE PROTEIN 2 2.3e-183
    HMMPanther TUBBY-RELATED 2.3e-183
    HMMPfam Tubby, C-terminal 6e-119
    HMMPfam F-box domain, cyclin-like 1.1e-10
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76

    See the detailed result >

    AT1G25280.1

    Model type
    Protein coding
    Short Description
    tubby like protein 10
    Curator Summary
    Member of TLP family
    Computational Description
    tubby like protein 10 (TLP10); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 961 Blast hits to 946 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 353; Fungi - 21; Plants - 475; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR