K39210

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39210

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39210

Determination of introduced cDNA(s)

J023086C22 - Rice Full-length cDNAs - Original: J023086C22

full reading [+] show sequence

AGGCGTCGCA AGCATGCGTT TCTAGGAGAA AGTAAAGCTT GCGTTTTTGA 
GACTAAAGCT TGCGTTTTTT GTTTTTTAAT TGTGGAGTTT GGGAGGAGGA 
GGGGAAAAAA TCGCGATCAG GAAAAGGCAT CTCGAGAATA ATTATTTAAG 
TCCCCAGAGC GAGCAGTGAC GCGAAATTCC CCAGGAGAGA TCTCCATCTC 
CACCTCCACT GCTCAGGCGG GGATGTCGTC GGCGGCGTCG GCGTCGGCGG 
CCGGAGGGGC AGGCGAGGAG GGCGCCGCCG CCGCCGCGCA GCCGCAGCAG 
GAGGGGCCGG TGGTGACCTG CAAGGGCGTG AACGGGCTCG ACAAGGTCGT 
CCTCCGGGAG GTCCGAGGCA GCTCTGCCGA GGTGTACCTG TATGGCGGCC 
ATGTCACATC ATGGAAAGAT GAGCATGGAG AGGAGCTGCT TTTTGTTAGT 
AATAAGGCTA TTTTCAAACC TCCAAAAGCT ATACGTGGAG GGATACCAAT 
CTGCTTTCCT CAGTTTTCCA ACTTCGGAAA TCTGGACCCA CATGGCTTTG 
CAAGGAACAG GACCTGGAGT GTTGAAAATG ATCCACCACC ATTTCCAGTA 
CCAACTTCTA ATAAAGCTTA CGTCGATTTA ATCCTTACGC ATACTGAAGA 
AGATCTAAAG ATCTGGCCAC ATAGTTACGA GTTCCGTCTG AGAGTTGCAC 
TTGGACCTGG TGGAGATCTG ATGCTGACTT CACGTATAAG AAATACCAAT 
GCAGATGGAA AGCCATTCTC ATTTACATTT GCATATCACA CATACTTTTC 
AATATCTGAT ATCAGCGAGG TGCGAGTAGA AGGCCTGGAA ACTCTGGATT 
ACCTAGACAA CTTACAAGAG AGAAATCGAT ACACTGAACA AGGGGATGCA 
ATTGTTTTTG AATCTGAATT GGACAGAATA TATCTGGGCA CACCGTCAAA 
AATTGCCATT ATTGATCATG AGAAGAAAAG AACATTTGTT GTGAGGAAAG 
GTGGCCTTCC TGATGCTGTT GTTTGGAACC CTTGGGACAA GAAGGCTAAG 
GCTATGTCAG ACTTTGGGGA TGACGAATAT AAACGCATGG TCTGTGTGGA 
GGCAGCTGCT ATAGAAAAGC CGATTACTTT GAAGCCTGGT GAGGAGTGGA 
CTGGAAAGTT GGAACTGTCT GCTGTCCCAT CTAGCTATTA CAGTGGTCAG 
CTGGATCCTG ATCGTGTTCT TCAGGATTCA AGTGTCCCGG AGGACTCAAT 
CAGCTAGTCC TTAGTGGATA TTTGTCCAGG TAGACTATTA TATCATATGC 
ATAAGGGACA TTGGCAACAA GGAGTGTCAA AACGTTTATT CCATTCTATT 
CAAATCTTTG TTGTTTTTTG GCATGCATAT CTGAACTGAG GAATTTCAAA 
ATTGATTTAC GTTTTGATAT CTACATAACG TAAGGGGACG GGTCGGTATT 
AATACCCTGT ATATGCATGT TTGAAGTGAG AAACATCTCA TTGGGTTGTA 
AAATAAAAAT CAATACTGTA TCTCTTTTTT GATCGGCACC TTTTCCATTC 
TAATATCAAG TAAAATAGTA CACCTACAAA ACATAGTCAC CTGTCCTACG 
AACGTGCATA TGAGGTATAA ACATTCTGAG CTTGGTTAAA ACCAGGACTT 
GTTTGGATCC

Gene models with high sequence identity

AT5G57330.1 [+] show detail - Galactose mutarotase-like superfamily protein
E-value: 4e-141; Score: 498.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	APOSPORY-ASSOCIATED PROTEIN C-RELATED	2.4e-125
superfamily	Glycoside hydrolase-type carbohydrate-binding	9.2e-84
HMMPfam	Aldose 1-epimerase	3.4e-68
Gene3D	Glycoside hydrolase-type carbohydrate-binding, subgroup	3.2e-84

See the detailed result >

AT5G57330.1

Model type: Protein coding
Short Description: Galactose mutarotase-like superfamily protein
Computational Description: Galactose mutarotase-like superfamily protein; FUNCTIONS IN: isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT3G61610.1); Has 1923 Blast hits to 1920 proteins in 763 species: Archae - 0; Bacteria - 1269; Metazoa - 39; Fungi - 135; Plants - 272; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Link: InterPro Scan - TAIR