K39219

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39219

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39219

Determination of introduced cDNA(s)

  • J033075H06 - Rice Full-length cDNAs - Original: J033075H06

    full reading [+] show sequence

    Nucleotide sequence: J033075H06 - full reading 
    GACCGGCCAC CGCCCGCAAG CACCGACGCG ACGCGGCCTC GGCGGCCTCT 
    CCATCACCGG CGGCCACCGC GCCACAGCAA GGGTGAAATT GTAAAGGAGT 
    TTTTTTTTAC AGTTCTTGAT CTGAAACGGA GACAATGGCG AGAGAGGATG 
    AGAAGGCTGA CGCAATGGAG ATTGATGGGC AGCATCAGCA AGTGGCCAAC 
    ACCGCCGTAC CAGATGGCTT CAATGCTGAT TACCTCAGGA TCTACTATGA 
    AAGCTGCGAT CTTGAAGCAA AATATTTTTC TAGAACACAC TGGAGCAAAA 
    TATTTTGGCA TATATATACA CTGTAATAGT GGTTGTAGGT AATCTATATG 
    CTTTCTCCAT GGAAAAATGT CGCAACTTCT TGCAACTGCA GTCCAGAATA 
    ATAGTTATTG GTCTGTGCAG TTCAAATGGT TTTAACTAAA AGATGCTTAA 
    TTTAATATCA CAGTTGATCT GCCATATAAT TTCCACTTAA ACAATTGTGA 
    TGGCCAACTG CCAGTGCTAA TGGTTTTGTA TGTATGCTAC AATTGCAGGA 
    AAGCTCTTCC CTCATGTTGA TTTCTTCAAG TGGCTTTCAT ATGGAAATGG 
    TCTGTTGTTG TTGGTTCAGG ATCTAGTTGT TTACTAATTG TTTCATCTAT 
    ATAATACGAA TTTGTCCTTT TTTAGACGGG AAACATCCAG GATGTGATCA 
    GTCGTATGTT GGACGTCGAG AGTTCTCATT TACACTAGAG AATGACATCT 
    ACGTTCGTTT CCAGTCCTTT GATAGCGTGG CTGAAATGGA GAACTCTATC 
    AAGGAAAAGT GCCCTTTCAA GATTGATATT GGACCTGTAT ATAGTGTAGA 
    TCCTGCAAAG CGGCATGCCT ATGCTCAATC AGGCAACAAC GTCTTTGTGC 
    CAGTTGAGAG AGAACTTATT TTCGATATAG TAAGAAACCT GCAAAATTTC 
    TCCTGTGGAT TTTATTTGTA TTTTTCATCA AGCATCTGTT CCAAGCTGTG 
    AGGCATTTCA ACATCACAGG ATATATCAGA TTACGATGAT GTTCGCTATT 
    GCTGCTCTGG AGCTGATGTC TGCATGGAGT GCTGGCCTTT AATGACCATT 
    GCTATCAAAA TCTTGGATGC TTCACTTAGA GGCATGTTGT TTTGCAATGC 
    AATTAATTAA ACACACATGC AAACACTCGC TTTTATTTCA GTTTAATTGA 
    CTTGAATTGC AGATCTTTAG TCAACTATTT TCTTGGTTAG TTTGACTTGT 
    AACAATTGAA AGTATGTGTT TACAGATGAT TTTGGTTTCA ATCACATATT 
    GTGGGTATAT AGTGGTCGTC GTGGTGTCCA TTGCTGGGTT TGTGATAGTA 
    GAGCAAGAAA GTATGCATGA TGTTTTTCCC TTTTTCATTT CTCCATTTAG 
    TTTGGTGATC CTAAAATGCT CTGGTACTTT CCTGTTAGGC TCAACAACGA 
    ACAAAGGGCT GCAATTGCTG ATTATTTTCG CGTCTACAAG GGTGGTGAAA 
    ATACGATGAA GAAAGTTTCA TTGACTGGAG CTGTTCTCCA TCCTTTCCTT 
    GCACGGTCAT ACACTGATGT TCTGAAAGGC TTCTTTGAAG ATAAGCTACT 
    ACTTAGCCAA CAACTATTTG CATCTGAGGA GAGATATCAG AAAATACTTG 
    ATCTTATCCC TGATGAAAAT GTTGCTAGTG AGCTCCATGA TAAGTGGCAA 
    GGAAACAGAC GATCTTCTAT TTCAAAGGAA GATGTAAATG CTACCAGGTG 
    GGAGCAACTA AAGTCAACCT TGCAGTCAGG AAAACACAAG GGGCTTCGAA 
    GATGTATAGA AGAGATTGTC TTCTCATACA CATATCCTAG ACTTGATATG 
    GAGGTTTCTA AGCACATGAA TCATTTGCTG AAAGCACCCT TTTGCATACA 
    CCCGAAGACA GGTTAGACCC AAGTATATTT CCTATTTTTT CATCTAATGA 
    ATGAAGATAC TTGTTTGCAC TAGAAACTGT TTTTGTTGGC TGTCCGTGTG 
    TATACACTTC GTGTATCCGT TGGAAATCTC TAATGCAAAT GTTCCTTGAG 
    TGACACATTT TTCACATTTA TATGCATTCA TTTCATGCTT ACACTTATAC 
    GTAAAATATG TTCTGCCTAA TGAGTTCTAA GTTCTAACAA TTGTTTTGAA 
    ATCTTTCCCT AGGCCGTGTT TGTGTTCCAA TCGATCCAAA TAACTGTGAT 
    GATTTTGATC CTACGACAGT TCCAACTCTG TCACAGCTTT TGGGTGAGCT 
    CAATGCAGCT GGTCTTCGTA CTGATTCTGA AAACGATTGG GAAAGAACAT 
    CTCTTGAAAA ATCTATCAGG TTTTTCAGGG CATCGTTTCT GCAACCATTG 
    CTGAAAGCCT GCAAGGAGGA ATTAGAAAGC TCATACAATG CCAAGCTCCA 
    GCAGTCCAAG AATACCTTGA CTTGGTAAAA TTCACTCAAC TTCCAGCTGA 
    TCTTACCAAC CTAGTGCCCC ATGAAAAGCT TCTTCTCCAT GAGACGAACC 
    ACTGAACCCG GCATTGGCTG TGTTAACTGG TTAACCACAA CGCTCTATGA 
    ATGAGGAGCA AAATACTCTC CGATGCTGCT GTCATGTTAG CTTTGCTCCA 
    AGGAAGTTGC AATTGTAGAA TATCCAGTGA CCGTCTTAGA GGCAGCTTGG 
    TGCTGGCTTG AACCTTTTGA TCTTTCATGT TGCTGACTTG ATGTTATTAG 
    GATAAATTCC TTTAATTGTT GTGAAATGAA TTTTATAGGA TTCCTATAAG 
    TCGCTGAAAA GAATGATTGT TAAATGCTTC ATACCAAGCT AGTAGCCGCT 
    ATAAGATCTA GACTAGAATT AGTAAAATTA ACCATCAAGA TTGCTTAGAG 
    CAATGCTCGG TTTGTGGTTG ATGACTGTTG AGAATTTCTG TAAGATGCTG 
    TAAAAATAAA AGTTTCATCG TAGTTTATTT TACATATAGA ATTTAATATG 
    CC

    Gene models with high sequence identity

    1. AT5G41880.1 [+] show detail - DNA primases;DNA primases
      E-value: 5e-119; Score: 30.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DNA primase, small subunit, eukaryotic/archaeal 3.0999994589937e-12
    HMMPfam DNA primase, small subunit 2.4e-07
    HMMPfam DNA primase, small subunit 6.6e-16
    Gene3D no description 1.7e-12
    Gene3D no description 4.1e-06
    HMMPanther DNA primase, small subunit, eukaryotic/archaeal 4.8e-29
    HMMPanther DNA primase, small subunit, eukaryotic/archaeal 1.3e-15
    HMMPanther DNA primase, small subunit, eukaryotic/archaeal 1.4e-47
    superfamily Prim-pol domain 1e-16
    superfamily Prim-pol domain 1.9e-08
    superfamily Prim-pol domain 2.8e-24

    See the detailed result >

    AT5G41880.1

    Model type
    Protein coding
    Short Description
    DNA primases;DNA primases
    Computational Description
    POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR