K41350

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K41350

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K41350

Determination of introduced cDNA(s)

  • J033024D05 - Rice Full-length cDNAs - Original: J033024D05

    full reading [+] show sequence

    Nucleotide sequence: J033024D05 - full reading 
    GAGCGGAGAC AGAAGAAGGG GGGAGAAGAG AATCGCGGAG ATAGCATGAG 
    CAGCGGCGGC GAGCTCGCGC TGAGGCAGGA GTACGTCATC GGCGACGAGA 
    TCGGGCGCGG CCGCTTCGGC ACCGTCCGCC GCTGCTACGC CGTCGCCACG 
    GGGGAGGCGT TCGCGGTCAA GTCCACGCCC AAGGCGCCGC TGCGGGAGGC 
    GGAGGCGGCG GACGCGCTCG ACCTCGCGCT CGCGGAGCAG GAGCCCAAGG 
    TGCACCTCGT CGCGTCGGCG CCGGGGCCCG GGGCCAGCCC GCACGTCGTC 
    GCGCTCCACG CCGCCTTCGA GGACGACGCC GCGGTGCACC TCGTGGTCGA 
    CCTCTGCGCG GGCGGGGACC TCCTCTCCCT CGTCTCCTCC CGCGGCCGCC 
    TCCCGGAGCA CGAGGCCGCG GACCTCGTGG CGCAACTGGC CTCCGCGCTC 
    GCGTCCTGCC ACCGCCGCGG GGTAGCGCAC CGCGACGTGA AGCCCGACAA 
    CCTCCTGTTC GACGGCGGCG GCGTGCTCAA GCTCGGCGAC TTCGGGTCGG 
    CGGGGTGGTT CGGGGACGGG AGGCCGATGA CGGGGCTGGT CGGGACGCCC 
    TACTACGTGG CGCCGGAGGT GGTGGCCGGG AGGGAGTACG GCGAGAAGGT 
    GGACGTGTGG AGCGCCGGGG TGGTGCTCTA CATGATGCTC TCCGGGACCC 
    TGCCCTTCTA CGGCGCCACC GCCGCGGAGG TCTTCCAGTG CGTGCTCCGC 
    GGCAACCTCC GCTTCCCGCC GCGCGCGTTC GCCTCCGTCT CGCCGGAGGC 
    CAAGGACCTG ATGCGCCGCA TGCTCTGCAA GGACGTCTCC AGAAGGTTCT 
    CCGCCGACCA AGTCCTGAGG CATCCTTGGA TCGTGAGCCG TGGGGGAGCC 
    GCGGTGATGG GCTAGTTCGT TCGATCGAGG ATGATGATGA ACTCCATCCA 
    TGTGTAGATA GCTTTTCTTC AGGCGAAGGA CTCGTCTGCT AGCTGTGAAT 
    TTTGGCTTGG ATTAGTGGCA GGGTTCAGTG GTAGTAGCGT ATTATTAGTG 
    TTTGTGTCCA GTAGGAGTTA GGACCATGAC GAGCTCTGGT GAATTGGCTG 
    GAATTTGGGA GCTAGCTATA TCTTTCTACC CGAGTTTGTC CGATGTACAT 
    ACAGTGATCA GTTGATCACC TTTTGGCTGA ACTGAAGAAG AGGGTAGTCT 
    CTCTTAGTGC GTAGCAGGCT TGTTCAGATG AAAATTGAAT CCAAAAACAT 
    GAGAAAATTT CTGTGAATTG CTGCAGTTCA CCTATGCATA TTTCC

    Gene models with high sequence identity

    1. AT3G04530.1 [+] show detail - phosphoenolpyruvate carboxylase kinase 2
      E-value: 1e-67; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 45.29
    HMMSmart Serine/threonine-protein kinase domain 2.2e-88
    HMMSmart Tyrosine-protein kinase, catalytic domain 9.4e-11
    HMMPanther Calcium-dependent protein kinase 6.6e-93
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 6.6e-93
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 9.5e-64
    Gene3D no description 6.2e-13
    Gene3D no description 3.5e-65
    superfamily Protein kinase-like domain 1.4e-83

    See the detailed result >

    AT3G04530.1

    Model type
    Protein coding
    Short Description
    phosphoenolpyruvate carboxylase kinase 2
    Curator Summary
    Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light.
    Computational Description
    phosphoenolpyruvate carboxylase kinase 2 (PPCK2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase kinase 1 (TAIR:AT1G08650.1); Has 120539 Blast hits to 118552 proteins in 3545 species: Archae - 165; Bacteria - 14785; Metazoa - 43114; Fungi - 13204; Plants - 27915; Viruses - 518; Other Eukaryotes - 20838 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR