K44341

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)
T2
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow) epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic)
	rosette leaf (PO:0000014)	decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K44341

Determination of introduced cDNA(s)

J023044P07 - Rice Full-length cDNAs - Original: J023044P07

full reading [+] show sequence

GAGCGGCAGG CGGACTGGGC CTACTCCCGC CCCGTCGTGG CGCTCGACCT 
GCTCTGGAAC CTCGCTTTCA TCACCGTCGC CGCCGTCGTG CTCGTGCTCA 
GCCGTGGCGA GGACTCGCCC ATGCCGCTCC GGACCTGGGT CGCCGGCTAC 
GCCCTGCAGT GCGTCGTCCA CATGGTCTGC GTCGCCATCG AGTACCGGAT 
GCGCCGGGGG CAGCGTGACA GGGCCCCGGC GTCCGCCGAC GAGGAAAGGG 
GAAGTGACGG GTCGTCTTCA TCTAGCGATG ATGATGTCAC GGAGGACGAT 
CGCCGTGGTA GCTGCACCGA TTGCGTCAGT ATTGCAAAGC ACCTGGAGTC 
AGCTAATACA ATGTTCTCCT TCATATGGTG GATAATTGGA TTTTATTGGA 
TATCTGCTGG GGGTGAGGAT GTTATCCGTG ATGCACCTCA GCTTTACTGG 
CTTTGCATAG TCTTTCTGGC ATTTGACGTG TTCTTTGTTG TATTCTGTGT 
TGCTCTGGCT TGCATCATTG GTATTGCTGT ATGTTGCTGC CTACCTTGCA 
TTATAGCTAT TCTCTATGCG GTTTCTGATC AGGAAGGAGC GTCAGAAGAT 
GATATTCGCC AAATTCCAAG ATACAAATTT CGGAGAACAG ATGAACCTGA 
AAAACAAACT GCTGATGAGA CAGGACCTTT TGGTGGAATA ATGACAGAGT 
GTGGCACCAA TCAACCTATT GAGAAAGTAC TCGCACCTGA AGATGCGGAG 
TGTTGCATTT GCCTTTCGGC ATATGATGAT GGTGCAGAGC TGCGTGAACT 
TCCTTGTGGG CACCATTTCC ACTGTGCCTG CATTGATAAA TGGCTGCATA 
TCAACGCAAC ATGCCCCCTG TGCAAGTTCA ATATCCGGAA AAGTGGCAGT 
AGCAGTGGAA GTGAAGAAGT ATGATTGTGT GAATATCCTC CGGTCGAGAA 
CACCGATCCA TTTCAACTTC ACACCTGTCT CTGCTAATGC AACCACAGGA 
CCTGACCAGT GTAAATTTTG TATCCAAAAT GTGTGATTAG CGTCATATAT 
GTACTTGAAG TGACTCAAGA CTGCTGTTCA TATCCACATA CATGGTTGTC 
CAATGTGTCT TTTACTGTCC GGAATACATG CTTAGTTGCC CCGTGAGTTG 
TAATTCTTCG AGTGATCCTC ACATTTCCTG CTTGTGTTAG CATGGTTTGT 
GCTTATGCTC CTGCCTTGGT CATTGGTTCA GCACAAAAAC TGTTGTAAAT 
GGGCTATCGG TCCTGTTGAA TTGTCAGGTA CAAACGAAAT GCGTCCTGCT 
TATGATTCG

Gene models with high sequence identity

AT1G12760.2 [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
E-value: 2e-101; Score: 366.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Zinc finger, C3HC4 RING-type	1.2e-06
ProfileScan	Zinc finger, RING-type	12.652
HMMPanther	RING FINGER PROTEIN 38	2.7e-16
HMMPanther	RING FINGER PROTEIN 6/12/38	2.7e-16
superfamily	RING/U-box	1.3e-15
HMMSmart	Zinc finger, RING-type	5.2e-07
Gene3D	no description	9.1e-13

See the detailed result >

AT1G12760.2

Model type: Protein coding
Short Description: Zinc finger, C3HC4 type (RING finger) family protein
Computational Description: Zinc finger, C3HC4 type (RING finger) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR