K45318

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K45318

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K45318

Determination of introduced cDNA(s)

  • J013119K22 - Rice Full-length cDNAs - Original: J013119K22

    full reading [+] show sequence

    Nucleotide sequence: J013119K22 - full reading 
    GACTCCACTC CATCACCTCC TGCTTGAGCA AGCAAGCAAG CAATCGCTGC 
    AGCCAACTGT TCGACCAGAG CGAGTTAGCC ATGGCGTACA GAGTTCTTGA 
    GGTGACCCTC CACTCGGCGA GGGACCTGAA GAACGTCAAC TTCATCTCGC 
    GCATGGAGGT GTACGCGGTG GCGACCATCT CCGGCGACCC GCTGACGCGG 
    CAGTGCACGC CGCCGGACCC CTACGGCGGC CGCCACCCGG CCTGGAACGC 
    CACGCTCCGC TTCACCGTCC CGCCTACCGC CGCCTCCGCC GCCGGCTGCC 
    TCCACGTCCT CCTCCGCGCC GAGCGCTCCC TCGGCGACCG CGACATCGGC 
    GAGGTCATCA TCCCGCTCGC CGACGTCCTC TCCGGCCCCT ACGACCTCGG 
    CGCCCGCCCG CCGCAGTTCG CCTCCTACCA GGTCCGCAAG CTCCATCGCT 
    CCGAGACCCG CGGCGTGCTC CACCTCTCCT ACCGCCTCGG CCCCGTCGTC 
    GCGCCGCAGT CCGTCTTCGC CTACCCGGCG CCGCCGCCGC CGCCGCCGCA 
    GCTGTTCGAG ACCGCTCCTC CCTCGCCGCC TTACGTTCCC CCACCACCGG 
    ACGCCTACCT TCGTAAACCG TCGCCGCCGT CTCCACCACC CGCCAAGCTG 
    TCGCCGCCGC CACCGCCACA GACACAGACA CAGCCGCTGG CAAAGCCGCC 
    GGCGCCGGCG ACGCCGTCGC GAGCTGGCGG GCACGTGGCG GCGCTGGCGC 
    CACCTGCGGT GGCGAAGGCC GACAGGCACG TGTCGACGCC GTCACCGGCG 
    AAGGCCGACT GGCAGATGGT GGGCACGCCG ACGGCGACGA AAGGGGCGAG 
    CAAGCATGGC AGCCTGGAGT TCGAACGGGG GCTCAACGCC GGGCTGGTCG 
    GCGGCGCCAT CGGCGGGATG CTGGTCGGCA CCGAGATGGT GTCCGACGCG 
    GCGTTCTACC ACGCCGGCTA CAGGGCCGGG CTCGCCGACC GCGACGGATG 
    GGCCGTCTAC TAAACCGTCG TCGCCATGGC TGCAGGTGCA GCGCCATGCA 
    TGGTCGGTCG GCGAAGATGC TTAGCTGAAT AAAAGTCTCT GGTTTTCTTT 
    TTTTGGCCTT TTGAGATTAG CTCAATAAAA GTCGATGAAA TTTACTTTGG 
    CTGAGAGTTT GTAACTCTTC CTCTTCGGCT AGTGAATTAA TCGACTTGTT 
    GTATATATTT TGTTACTGGT TATGATGTAA TATATGGCCA CGAAAATCC

    Gene models with high sequence identity

    1. AT3G16510.1 [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
      E-value: 1e-15; Score: 81.60

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1e-06
    HMMSmart C2 calcium-dependent membrane targeting 1.5e-05
    superfamily C2 calcium/lipid-binding domain, CaLB 1.8e-16
    HMMPfam C2 calcium-dependent membrane targeting 1.3e-06

    See the detailed result >

    AT3G16510.1

    Model type
    Protein coding
    Short Description
    Calcium-dependent lipid-binding (CaLB domain) family protein
    Computational Description
    Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT4G15755.1); Has 24270 Blast hits to 15902 proteins in 854 species: Archae - 8; Bacteria - 1639; Metazoa - 9119; Fungi - 5377; Plants - 5202; Viruses - 451; Other Eukaryotes - 2474 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR