R03917

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R03917

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R03917

Determination of introduced cDNA(s)

  • J013048A01 - Rice Full-length cDNAs - Original: J013048A01

    full reading [+] show sequence

    Nucleotide sequence: J013048A01 - full reading 
    GCGGCTGCAC TGATCGATTC CATCACTCTC TCTCTCTCGC CTGCTCGCGG 
    TTGCCTGTGC GTTCGTCTCG CGATTTCTCC TCCTCCTCCT GGGATCATGG 
    CGATGTGGAG GGCGGCGGCG GGGCATCTTC TCGGCCGCGC GCTCGGCTCC 
    AGGGCCGCGC ACACATCAGC AGGCAGCAAG AAGATCGTGG GTGTGTTCTA 
    CAAGGGCGGC GAGTACGCCG ACAAGAATCC CAACTTCGTC GGCTGCGTGG 
    AGGGCGCTCT CGGCATCCGC GAATGGCTTG AGTCCAAGGG GCATCACTAC 
    ATTGTCACCG ACGACAAGGA GGGGCTAAAC AGCGAGCTGG AGAAGCACAT 
    TGAGGATATG CATGTCTTGA TCACCACCCC TTTCCACCCA GCCTATGTTA 
    GCGCAGAAAG GATCAAGAAG GCAAAGAACC TCGAGCTGCT TCTCACAGCT 
    GGGATTGGGT CAGATCATAT TGATCTGCCA GCAGCTGCTG CAGCAGGTTT 
    AACTGTGGCA GAGGTTACCG GAAGTAACAC TGTGTCGGTG GCAGAAGATG 
    AGCTCATGCG CATTTTGATT TTGCTCAGGA ACTTCTTGCC CGGGTATCAG 
    CAGGTTGTTC ATGGTGAATG GAATGTTGCT GGCATTGCCT ATAGGGCTTA 
    TGATCTTGAA GGAAAAACTG TGGGGACTGT TGGGGCTGGT CGTATTGGCA 
    GGCTCTTACT TCAGCGTCTT AAGCCCTTTA ACTGCAACCT GCTGTACCAT 
    GACAGACTTA AAATTGACCC AGAACTTGAG AAAGAAATTG GGGCCAAATA 
    TGAAGAGGAT CTCGATGCTA TGCTTCCAAA GTGTGATGTC ATTGTGATCA 
    ATACACCTCT TACAGAGAAA ACAAGAGGTA TGTTTAATAA AGAAAGAATT 
    GCAAAGATGA AGAAAGGTGT AATCATTGTG AATAATGCTC GAGGAGCAAT 
    CATGGATACC CAGGCGGTTG CAGACGCTTG CTCTAGTGGT CAAGTTGCAG 
    GATATGGTGG TGATGTCTGG TTCCCCCAAC CAGCACCAAA GGATCACCCA 
    TGGCGATACA TGCCTAATCA TGCCATGACC CCTCATATCT CTGGGACTAC 
    AATTGATGCA CAGCTGAGAT ACGCAGCAGG AGTGAAGGAC ATGCTGGACA 
    GGTACTTCAA AGGGGAAGAC TTCCCGGTGC AGAACTACAT CGTCAAGGAA 
    GGTCAGCTCG CGAGCCAGTA CCAGTAATAA CCCTTCCTTG TGTGTTGGGT 
    GTCCATCCTG TGGCCACCTT CCCGCAGTGA AGGGAAACAG AGATTCGGAT 
    AGGAACCAAA ACACCTTGTG TTGTTGTTGT TGCCTGAGTG TTCCCTGAGA 
    AACTATTGGA CACCGGAAAT AATGGATGCC TGCCATGGCA ACCATGGCTC 
    CGAAGAATAA AAAGCCCTCG GATTAAACAG TTCAGTTCAG TTCGTCTATG 
    TATGATCTTT TATGTGCTTT CTGCTCTCTG TTTTTGATGT GAATTTTCTA 
    GTCCAGTACT CCAGTTGCAC ATAACAATTG TACTTGTACC TGAGTACCTC 
    CATGCCAGGG GCCGGGGGCA CCCTTTGCCT TACTGCCTCG GCAGTCGGCT 
    GGAGGGCTGC AGTCTGTTAT CTATGGAATC TTTGGTTAGT TGTTGCCT

    Gene models with high sequence identity

    1. AT5G14780.1 [+] show detail - formate dehydrogenase
      E-value: 1e-170; Score: 596.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 5.5e-56
    superfamily NAD(P)-binding domain 5.6e-57
    superfamily Formate/glycerate dehydrogenase catalytic dom 3.5e-48
    superfamily Formate/glycerate dehydrogenase catalytic dom 0.0023
    PatternScan D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 0
    PatternScan D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 0
    PatternScan D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 0
    HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 7.8e-53
    HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 2.1e-17
    HMMPanther FORMATE DEHYDROGENASE 1.1e-237
    HMMPanther 2-HYDROXYACID DEHYDROGENASE 1.1e-237

    See the detailed result >

    AT5G14780.1

    Model type
    Protein coding
    Short Description
    formate dehydrogenase
    Curator Summary
    Encodes a NAD-dependent formate dehydrogenase.
    Computational Description
    formate dehydrogenase (FDH); FUNCTIONS IN: NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding; INVOLVED IN: response to cadmium ion, response to wounding; LOCATED IN: thylakoid, mitochondrion, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT1G17745.1); Has 28984 Blast hits to 28977 proteins in 2707 species: Archae - 468; Bacteria - 17844; Metazoa - 730; Fungi - 1196; Plants - 566; Viruses - 5; Other Eukaryotes - 8175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR