R07606

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R07606

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R07606

Determination of introduced cDNA(s)

  • J033051N12 - Rice Full-length cDNAs - Original: J033051N12

    full reading [+] show sequence

    Nucleotide sequence: J033051N12 - full reading 
    GGCTCAAAAT CCTTTCCGCT CAGATAAGAG AGGCCGGAGA CTGAGAGAGA 
    GGGAAACTCG TACACAGAGA GAGTATGGAC GTGGAGAAGG TGGAGAGGAA 
    GGAGGTGGCC GTCGACGACG ATGGCCGCGT CAGAACAGGA ACGGTATGGA 
    CGGCGACGAC GCACGCCATC ACCGCCGTGA TCGGGTCAGG CGTGCTGGCG 
    CTGCCGTGGA GCGTGGCCCA GATGGGGTGG GTGCTCGGCC CCATCGCCCT 
    CGTCGTCTGC GCCTACATCA CCTACTACAC CGCCGTCCTC CTCTGCGACT 
    GCTACCGCAC GCCGGACCCC GTCCACGGCA AGCGGAACTA CACCTACATG 
    GACGTCGTCC GCTCATGCCT CGGGCCTCGA GACGTGGTCG TGTGTGGCAT 
    TGCGCAGTAC GCGATTCTCT GGGGCGCAAT GGTGGGTTAC ACCATCACGA 
    CCGCTACGAG CATCATGTCA GTGGTGCGCA CGAACTGCCA CCACTACAAG 
    GGGCCGGACG CGACCTGCGG CTCGTCCGGG ACGATGTACA TGGTGCTGTT 
    CGGCCTCGCG GAGGTCGTCC TGTCCCAGTG CCCGAGCCTG GAGGGGGTGA 
    CGCTCATCTC CGTCGTCGCC GCCGTCATGT CGTTCACCTA CTCCTTCGTC 
    GGGCTCTTCC TCAGCGCCGC TAAGGTCGCG TCGCACGGCG CGGCGCACGG 
    CACCCTCCTC GGCGTCAGGG TCGGCGCCGG AGGCGTCACC GCGTCGACCA 
    AGGCGTGGCA CTTCCTGCAG GCGCTCGGGA ACATCGCCTT CGCGTACACC 
    TACTCCATGC TGCTCATCGA GATCCAGGAC ACGGTGAAGT CGCCGCCGTC 
    GGAGAACGTG ACGATGAAGA GGGCGAGCCT GTACGGCATC GGCGTCACGA 
    CCGTCTTCTA CGTGTCGATC GGGTGCGTCG GGTACGCGGC GTTCGGCAAC 
    GCCGCGCCCG GGAACGTCCT CACCGGCTTC CTCGAGCCGT TCTGGCTCGT 
    CGACATCGCC AACGTTGCCG TCGTCATCCA CCTGGTCGGA GCGTACCAGG 
    TGTACGCGCA GCCGGTGTTC GCGTGCTACG AGAAGTGGCT GGCGAGCCGT 
    TGGCCGGAGT CGGCGTTCTT CCACCGGGAG TACGCGGTGC CGCTGGGCGG 
    CGGGCGCGCG GTGCGGTTCA CGCTGTGCAA GCTGGTGCTG CGCACGGCGT 
    TCGTGGCCGT GACGACGGTG GTGTCGCTGG TGCTGCCGTT CTTCAACGCC 
    GTGCTCGGGC TGCTCGGCGC CGTCGCGTTC TGGCCGCTCA CGGTGTACTT 
    CCCGGTGACC ATGTACATGG CGCAGGCGAA GGTGCAGAGA GGCAGCCGGA 
    AGTGGGTGGC GCTGCAGGCG CTCAACGTCG GCGCGCTCGT CGTGTCGCTG 
    CTCGCGGCGG TGGGCTCGGT GGCCGACATG GCGCAGCGCC TGCGCCACGT 
    CACCATCTTC CAAACGCAGC TCTGAACCCG GATGGACGCA TGCAGCCGAT 
    GAGATTATGC ATGTAGTACT ACTCCTACTA CTTTTGTTGC TGTACTCGTA 
    CTAGTTGCTG GTGTAATTTG GCTGTCGTGT TACAAGCTAC TACTACTAGT 
    ACAAGCCCCT CTGTTTTTAT ACCTCTGAAT TTAGCAAATG GGACTTGAGG 
    AGTATGGTTA TCCTATGGAC AAAACTGTGT ACGTTATTCC GGTTGGGATC 
    GTCAAGCATA GCATATAGGA ATTTCGGGTG AAAGAATTCA ATTATGAGTA 
    TTAGCT

    Gene models with high sequence identity

    1. AT1G44100.1 [+] show detail - amino acid permease 5
      E-value: 1e-136; Score: 483.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Amino acid transporter, transmembrane 3.5e-102
    HMMPanther AMINO ACID TRANSPORTER 1.3e-93

    See the detailed result >

    AT1G44100.1

    Model type
    Protein coding
    Short Description
    amino acid permease 5
    Curator Summary
    amino acid permease 5
    Computational Description
    amino acid permease 5 (AAP5); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 3 (TAIR:AT1G77380.1); Has 2256 Blast hits to 2241 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 536; Fungi - 289; Plants - 1230; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR