R90355

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90355

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90355

Determination of introduced cDNA(s)

  • J023075H05 - Rice Full-length cDNAs - Original: J023075H05

    full reading [+] show sequence

    Nucleotide sequence: J023075H05 - full reading 
    GGCACGATAC TGGACCCCTC GTGATGGACA CCCGCCTCCC CCTCCTCCTC 
    CTCCTCGCCG GCGTCGTCGC CGCCGCGGCG CCACTGCTCG CCACCGCCCA 
    GCTCTCCGCC GACTTCTACT CCTCCACCTG CCCCAACGTC GAGAAGGTCG 
    TCTCCACCGT CATCGAGCGC AAGTTCAAGG AGGACCCTAC CACCTCCGCC 
    CTCCTCCTCC GCCTCCTCTT CCACGACTGC TTCGCCAATG GATGCGACGC 
    GTCGATCTTG ATCGACCCGC TGTCGAACCA GAGCGCGGAG AAGGAGGCGG 
    GGCCGAACAT CTCGGTGAAG GGCTACGACA TCATCGACGA GATCAAGACG 
    GAGCTGGAGA AGGAGTGCCC GCAGGTGGTG TCGTGCGCGG ACATCGTGGC 
    GCTCAGCACG CGCGACAGCG TGCGCCTCGC CGGGGGCCCC AACTACGACG 
    TGCCCACCGG CCGCCGCGAC TCGCTCGTCT CCAACCGCGA GGAAGGCGAC 
    TCGCTCCCCG GCCCGGACAT CGCCGTCCCG AAGCTCATGG CGCAGTTCTC 
    CGAGAAGGGG TTCAGCGCCG ACGAGATGGT CGTCCTCCTC GCCGGCGGCC 
    ACTCCATCGG CAAGGCCAAG TGCTTCTTCA TCGAGGTCGA CGCGGCGCCC 
    ATCGACCCGA CCTACCGCTC CAACATCACC GCCTTCTGCG ACGGCAAGGA 
    CGGCGACAAG GGAGCCGTCC CCCTTGATCC CATCACCCCC GACGTCGTCG 
    ACCCCAACTA CTTCGAACTC GTCATGGACA AGAAGATGCC GCTCACCATC 
    GACCGCCTCA TGGGGATGGA CGCAAGAACG AAGCCCATCG TGGAGTCCAT 
    GGGTAAAAAG ACCGACCAGT TCGACGCCAC CTTCGGCAAG GCCATGACGA 
    AGCTCAGCGG CATGAAGGTC ATCACCGGCA AGGACGGCGA GATCAGGAAA 
    TCGTGCTCCG AGTTCAACAA CCCGGTGAAC ACCGACGACG GCCCGTCCGT 
    CATCCGGATC AGCTCGCTGA ACCCCGAGGA GATGATGGGC TCCTTTGCGC 
    CGGCCACCGG GAAGTCCCCC TCCGCCGCCT CGGAGTCCAG GAAGGTGGCA 
    CCAGGCGGCG CCATGGAGGA AAGGATGGCG GCCGGTGAGG CGAAGACGGA 
    TGCTTCAGGC GGCGCCATGG CGGAAAGGTT GGCGGCCGGT GAGGCGAAGA 
    CGGCTGCTGC GGCCTCCGAG GATGAAAACC AAGCGGCAGC TGGTGGCGCC 
    GCCGGCGATG AGGCGGCGGC GGAGGAGGAG GGGACCAAGT CCAACAAGAA 
    GAAGGCCGAG CGGGTGACCG CAGAAGTACC TGCCGACGAG GCGGCGCCGG 
    CGGCAAAGAA GCCGAGGGCG ATGGGCGGAC AATCGTTCAG CATGGCCGGC 
    GCCGGCGCCG GCGGCGAGCC GGCGAAGAAG TCGACGGCGA TGAAGAGCCA 
    ATCCTTCAGC ATGGCGGGCC AGCCGCAACA GTAGACGAAG AAGAAGAAGA 
    AGAAGAAGAA GAAGAAGAAG ATGCCGCGCT GCTAGCTGAG CCGTTCGCAC 
    GGCGGCCTGA TCGAGCGCGC ATTGCCATTT ATCGTTTTTG ATTTTCTCAC 
    TCTCTATCTC GCCTGTTTGT AGAAGGGACG AGCATACTAC TACCGCTAAT 
    TACTAGGCTT AATTTTGCAA GTAATGTCGT GTCGAGTTTT TTTTAACAGC 
    GACCAAAAGC TCGATGATAT TTTCTCTTTT CATTTTCCCT TTTTTTTTTG 
    TCATTCTTGT TAAGAATTCG TTGCCAACTC AATCTGGCTG GCAAATAAAA 
    GTGTATTAAA TTTCCCCTTT TTATATAGAG AGACAGGTAC ACAATTGTAA 
    TTGTTTTTTT AGATCAACCA ATGCATGTGA AACGATATAC GTGCTACT

    Gene models with high sequence identity

    1. AT4G26010.1 [+] show detail - Peroxidase superfamily protein
      E-value: 2e-63; Score: 240.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Haem peroxidase 6.5e-93
    PatternScan Peroxidase, active site 0
    Gene3D no description 4.6e-54
    HMMPfam Haem peroxidase, plant/fungal/bacterial 5.1e-63
    ProfileScan Haem peroxidase, plant/fungal/bacterial 65.577
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-24

    See the detailed result >

    AT4G26010.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G34510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR