R90409

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90409

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90409

Determination of introduced cDNA(s)

  • J023093N24 - Rice Full-length cDNAs - Original: J023093N24

    full reading [+] show sequence

    Nucleotide sequence: J023093N24 - full reading 
    GGACGACCCA ACCAATCGAC TCGCACCACC ACCAGCAGCT CAAGCAGCAA 
    CAGCTCAAAC GGAGGAAGAT CTCATCGCCA TGACGACCGG CAATGGCGAC 
    GCACCGGTGA TCAAGAACGC CCACAGCGAC ATCGACAGCA CCAACAAGAC 
    GCTGCTCAAG AGCGACGCCC TGTACAAGTA TGTCCTGGAC ACGACGGTGC 
    TGCCACGGGA GCCGGAGTGC ATGCGCGATC TGCGCCTCAT CACGGACAAG 
    CACCAGTGGG GGTTCATGCA GTCGTCGGCG GATGAGGCGC AGCTGCTGGG 
    GATGCTGCTG AAGATGGCCG GAGCGAAGAG GACAATCGAG GTGGGTGTCT 
    TCACCGGCTA CTCGCTGCTG GCGACGGCGC TGGCGCTGCC GGAGGACGGG 
    AAGGTGGTGG CGATCGACCC GGACAGGGAG AGCTACGAGA TCGGGCGGCC 
    GTTCTTGGAG AAGGCCGGGG TGGCGCACAA GGTGGACTTC CGCGAGGGGA 
    AGGGGCTGGA GAAGCTGGAC GAGCTGCTCG CCGAGGAGGC GGCGGCGGGG 
    CGCGAGGCGG CGTTCGACTT CGCGTTCGTG GACGCGGACA AGCCCAACTA 
    CGTCAAGTAC CACGAGCAGC TGCTGCAGCT GGTGCGCGTC GGCGGGCACA 
    TCGTGTACGA CAACACGCTG TGGGCCGGCA CGGTGGCGCT GCCGCCGGAC 
    ACGCCGCTGT CGGACCTGGA CCGGAGGTTC TCCGTCGCCA TCAGGGACCT 
    CAACTCCAGG CTCGCCGCCG ACCCGCGCAT CGACGTCTGC CAGCTCGCCA 
    TCGCCGACGG CATCACCATC TGCCGCCGCC TCGTGTGAGG TCGAGACCGA 
    GACCTTACCG GCCGATCCAT CCATCGCTCT CGCGTGATTA ATTAACGTGT 
    GTTGCTGTAC TCTTCTACTG CTACAACTAT ACTATTACTT CCTTAATTGC 
    CGCTTAAATT TTCCTATACG TGTTTCAATC AATGAGATTA TTATATTCTT 
    CGAGCATGAG AGAGACGGAG TTGTAGGGAC ATTTGATGAT GGTTGTTACT 
    GTACTACATG TTGATAAGTG CAACATCTCT TTCCATGGTT GCTACTCT

    Gene models with high sequence identity

    1. AT4G34050.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 5e-64; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther O-methyltransferase, family 3 1.6e-70
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.7e-38
    Gene3D no description 1.1e-50
    HMMPfam O-methyltransferase, family 3 7.6e-78

    See the detailed result >

    AT4G34050.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1); FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26220.1); Has 5458 Blast hits to 5455 proteins in 1478 species: Archae - 33; Bacteria - 3172; Metazoa - 243; Fungi - 122; Plants - 614; Viruses - 0; Other Eukaryotes - 1274 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR