R90420

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90420

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90420

Determination of introduced cDNA(s)

  • J023025J11 - Rice Full-length cDNAs - Original: J023025J11

    full reading [+] show sequence

    Nucleotide sequence: J023025J11 - full reading 
    GATCCGCGGC TAATCTCCTC TGCTCGCCGC GCGCCACTTC CTCACTCCTC 
    GCAAGCGGCA GCTCAGCGCC GCCGTCTCCT CCTCCGCCAT GATCGTTGCC 
    ACCGCCACCA TCCCGTTCTT CCCCTCATTC CACCGCCCGC GGTTCAGGCC 
    CGGCGGCCTC CCGCGCCGGG TTGTGGTCCT CCGGTGCTCG GCGTCGTCGT 
    GGGAGGAGCG CGAGGAGGCG CGGTGGCTGC GCGAGGAGCA GCGCTGGCTG 
    CGGGAGGAGC AGCGGTGGCT CCGGGAGGAG TCGCGGTGGC GCGCCGAGCG 
    CGAGTCCCTC CTCGCCGAGA TTGCCGCGCT CCGCCTCCGC CTCGGCACGG 
    TCGAGGCGGG CCCGCTCCCC CTCCCGTCCG TCGACGCCGC AGTGGCGTCA 
    CCAGCACCCT CGCCCGCTGT TGCGGCGGTG CCGCCGCCGC CGCCTCCGCC 
    GGCGGCGGCG CCCAGGCCAC CGCTGGTGGT GGAGGAGGAG GTCGAGGTGA 
    GGAAGGAGGT GGTGGTGGTC GAGCAGAAGG CGGCCAAGGC GAAGAGCGGC 
    GGCGGCGACG GCGGCGGGAG GAGGACGCTG AGGGTGGGTG CCGAGGGGGA 
    GGACGTGCGC GCGATGCAGG AAGCATTGGA AAAGCTGGGT TACTATTCGG 
    GCGAAGAAGA CATGGAGTTC TCCAGCTTCT CATCTGGCAC CGAACGAGCT 
    GTGAAGACAT GGCAGGCAAC AGTACGGGTT TCGGAGAGTG GAATTATGAC 
    ATCAGATCTG CTTGACATGT TATTTACAGG ACAAGTTGGG CAGGATGTGA 
    AAACAAAAGA TGGCATAAAT GGAGCAGCCA TTCCCTCCAT AACAGAAATT 
    GCAGAGATTC AACAAACTGT TGTGAAAGGA AATGGTGTCT CAGGAGTAGG 
    GTTGTCTGAA AATAGAGTGT TTCTCATCGG TGAAAACAGG TGGGAAGACC 
    CATCTAGGCT AACACAGAAG AATAAACCAA TCAGCAGCGC TACCAATGCA 
    TCAACTAAGA AGTGCATCTC TTGTCGGGGT GAAGGCCGCC TCATGTGCGT 
    AGAATGTGAT GGAACAGGTG AGCCGAACAT TGAACCACAG TTTTTGGAGT 
    GGGTCGGTGA AGATACGAAG TGTCCATACT GTGAAGGCCT TGGTTCAATT 
    GTATGTGATG TTTGTGAAGG GAAGACAGTA GCCACGAACT AAGCAACGTG 
    CTGGACCAAC ATGCTGTTTC ATTTGTGAAC ATCTATAACA GTTTATGTAG 
    ATAGATACTT GCCAATTATT CAAGTTCTTT TTCACAACAG TTGAAGAATA 
    GTATTCACAT GGCCAGTGTT AGTGCCCTAT ACAAAAGGTA GTCACGTTTG 
    AGACAATTTT GTTTTTGTAT AATAGGATAG GAAATATTAA CG

    Gene models with high sequence identity

    1. AT4G13670.1 [+] show detail - plastid transcriptionally active 5
      E-value: 3e-73; Score: 272.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Peptidoglycan binding-like 1.2e-11
    superfamily Heat shock protein DnaJ, cysteine-rich domain 2.5e-07
    HMMPfam Peptidoglycan binding-like 4e-10
    Gene3D Peptidoglycan binding-like 9.9e-06
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08

    See the detailed result >

    AT4G13670.1

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active 5
    Computational Description
    plastid transcriptionally active 5 (PTAC5); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding, metabolic process; LOCATED IN: plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan binding-like (InterPro:IPR002477), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 835 Blast hits to 827 proteins in 285 species: Archae - 9; Bacteria - 385; Metazoa - 155; Fungi - 28; Plants - 81; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR