R90469

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90469

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90469

Determination of introduced cDNA(s)

  • J033058D04 - Rice Full-length cDNAs - Original: J033058D04

    full reading [+] show sequence

    Nucleotide sequence: J033058D04 - full reading 
    GACCACCTCA CTCACTCCCT AAAACCCTCC TCCCTCCCCC ATCATCTCCC 
    TCCTCCCACT CGCCGCCGCC GCCGCCAACT TTCCCCACCA CCACCACCCA 
    TGGCGGCCAC CACCCACGCC GCCTCCCTCT CCTTCCTCCT CTCTCACCCC 
    CACCCCACCT CCCCCAACCC TAACCCTAAC CCTAACCTCC CCCTCCGCCG 
    CGCCCCCCAC CGCGTCCGCT GCGCCACCGA CGCCGCCGCC ACCAGGCACC 
    GGCGCGCGGC CGACGAGAAC ATCCGGGAGG AGGCGGCGAG GCACCGCGCC 
    CCGAACCACA ACTTCTCCGC GTGGTACGCG CCCTTCCCGC CCGCCCCCAA 
    CGGCGACCCC GACGAGCGCT ACTCCCTGGA CGAGATCGTC TACCGCTCCA 
    GCTCGGGCGG CCTCCTCGAC GTGCGCCACG ACATGGACGC GCTCGCCCGC 
    TTCCCGGGCT CCTACTGGCG CGACCTCTTC GACTCCCGCG TCGGCCGCAC 
    CACCTGGCCC TTCGGCTCCG GCGTCTGGTC CAAGAATGAG TTCGTCCTCC 
    CCGAGATCGA CCCCGACCAC ATCGTCTCCC TCTTCGAGGG CAACTCCAAC 
    CTCTTCTGGG CGGAGCGCCT CGGCCGCGAC CACCTCGCCG GGATGAACGA 
    CCTCTGGGTC AAGCACTGCG GCATCTCCCA CACCGGATCG TTCAAGGATC 
    TCGGCATGAC GGTGCTCGTC AGCCAGGTGA ACCGCCTCCG CCGCGCGCCG 
    CTCTCCCGCC CCATCGCCGG AGTCGGGTGC GCCTCCACGG GGGACACCTC 
    CGCCGCGCTC TCGGCCTACT GCGCCGCCGC GGGGATCCCG GCCATTGTGT 
    TCCTCCCCGC CAACCGCATC TCGCTCGAGC AGCTCATCCA GCCCATTGCC 
    AATGGCGCCA CCGTGCTCTC GCTCGACACG GACTTCGACG GCTGCATGCG 
    GCTCATCAGG GAGGTGACTG CCGAGCTGCC GATTTACCTT GCGAATTCAT 
    TGAATTCCCT TCGGCTCGAG GGGCAGAAGA CTGCTGCTAT TGAGATTCTT 
    CAGCAGTTCG ATTGGGAGGT GCCGGATTGG GTCATTGTTC CCGGAGGCAA 
    TCTTGGGAAC ATATATGCCT TCTACAAGGG ATTCGAGATG TGCCGCGTCC 
    TTGGGCTCGT CGATCGTGTG CCGCGGCTTG TCTGCGCGCA GGCTGCCAAT 
    GCGAACCCGC TGTACCGGTA CTACAAGTCG GGGTGGACTG AGTTCACGCC 
    GCAGGTGGCT GAGCCGACAT TTGCATCGGC AATTCAGATT GGTGACCCGG 
    TATCTGTCGA TCGCGCGGTG GTTGCGCTCA AGGCAACTGA TGGCATCGTC 
    GAGGAGGCCA CGGAGGAGGA ACTCATGAAC GCAATGTCGC TCGCTGATCG 
    CACTGGCATG TTTGCTTGCC CGCATACTGG GGTTGCCCTC GCAGCACTGT 
    TCAAGCTCCG TGACCAGCGC ATCATCGGGC CAAATGACCG CACGGTAGTC 
    GTCAGCACAG CTCATGGTCT GAAGTTCTCA CAGTCCAAGA TCGACTACCA 
    TGACAGCAAG ATCGAAGACA TGGCCTGCAA GTATGCGAAT CCCCCGGTCA 
    GCGTGAAGGC TGACTTCGGT GCCGTCATGG ATGTCCTCAA GAAGAGGCTC 
    AAGGGTAAGC TCTGAAGTGT GTTTGGCTAA CTCCCCTCCA ATCAATTGCT 
    GTATGTCAGT TGTCTTCTGC ATCAAATTCG AATGCGGCGG GTGACTGTGG 
    AGCGATGATT CGTCGATTTG TAGTAGTATT GTAGGTCCCT GAACCTTGAA 
    GATCGTCCAT GCTTGAGAGT AAAGATTGAG AGGCTATCTC TTGTACCTGT 
    TCTGTGTTGT GTGTGGGTGG GTAATAAGCG ACTACCTTGT TGTTTGAAAC 
    TCTGAATAAT CAGATCATCT AGTCCAATTA CTCCGTTC

    Gene models with high sequence identity

    1. AT4G29840.1 [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
      E-value: 0; Score: 717.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 1.8e-10
    FPrintScan PRICHEXTENSN 1.8e-10
    FPrintScan PRICHEXTENSN 1.8e-10
    FPrintScan PRICHEXTENSN 1.8e-10
    FPrintScan PRICHEXTENSN 1.8e-10
    HMMPfam Pyridoxal phosphate-dependent enzyme, beta subunit 5e-52
    superfamily Pyridoxal phosphate-dependent enzyme, beta subunit 2.7e-113
    HMMTigr Threonine synthase 4.3e-74
    HMMPanther THREONINE SYNTHASE 2e-139
    HMMPanther SER/THR DEHYDRATASE, TRP SYNTHASE 2e-139
    PatternScan Serine/threonine dehydratase, pyridoxal-phosphate-binding site 0
    Gene3D no description 1.2e-54

    See the detailed result >

    AT4G29840.1

    Model type
    Protein coding
    Short Description
    Pyridoxal-5'-phosphate-dependent enzyme family protein
    Curator Summary
    threonine synthase
    Computational Description
    METHIONINE OVER-ACCUMULATOR 2 (MTO2); FUNCTIONS IN: threonine synthase activity; INVOLVED IN: threonine biosynthetic process, metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Threonine synthase (InterPro:IPR004450), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: Pyridoxal-5'-phosphate-dependent enzyme family protein (TAIR:AT1G72810.1); Has 6824 Blast hits to 6824 proteins in 2025 species: Archae - 409; Bacteria - 4266; Metazoa - 101; Fungi - 24; Plants - 83; Viruses - 0; Other Eukaryotes - 1941 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR